Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01039 ATGATTGGAGTTTGGCTTGTGGTGTTGATGGTTCTCTCCAAAGGGTTATCTTCAACAGGGGTTGTACCAGATAATTTCACTATACCTTCTTTTGTAAATATTGGGGTTCTCTATTCTTTCAATACTAGTGTTGGTAGAATGGTGAAAACTGCTGTACAAGCTGCGGTTGACGATGTAAATTCTGATCCATCTATTCTTGCTAACACTAAGTTGAAGGCCTCACTGCAAGAAGATACTAAATACAGAGGTTTTCTGAGCATTGCCGAGGCCTTGCAGCTCATGGCAACACAAACTGTGGCTATAATCGGTCCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCGAACGAGCTCCAAGTTCCTCTGCTATCATTTACAGCCACTGACCCTACTCTTTCTTCGCTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTATGAAATGACTGCAATAGCAGACTTTGTTAACTACTTTGGATGGAGAGAGGTTATTGCAGTTTATGGTGATGATGACCATGGGAGGAATGGAATAGGTGCATTAGGGGATAAGCTTTCCGAGAGACGTTGCAAGATCTCATTTAAAGCACCTATGACTCCTGAGGCAACTAGGGAGGAGATTACGGATGTGCTTGTTCAGGCGGCCTTGGAAGAATCCCGGGTTGTAGTTCTTCACACAAGTACTGCTTGGGGCCCAAAAGTGTTAAGTGTGGCAAAGTCTCTAGGAATGATGGAAAACGGGTATGTCTGGATAACAACTACTTTTCTGTCTACTTGGCTGGATATAGGTAGTCCCCTATCTTCAGATGCAACGGATGACATGCAAGGAGTTATTACACTTCGAATGTATATACCAGATTCAGAGCGCAAAAGATGGTTTTTTTCTAGGTGGAAAAACTTGACTACTGGAAAGACTGCTAATGGTTCCCAGGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTACGCTCTTGCTCATGCACTTGATGCATTTTTCAAACAAGGGAACCAAATTACATTTTCACGTGATCCAAAGTTATCTCAACTACGTGGAGACAACATTCATCTTGATGCTGTGAAAATATTCAATGAAGGAAAGCTGTTGCATAAATATATTTATGAGGTTAACATGACTGGTGTATCAGGTCTATTCAAGTTTACATCTGATGGAGACCTTGTTAATCCTGCTTATGAAATCATCAATGTAATTGGAACTGGGACTCGGAGGGTTGGTTATTGGTCAAATTACACTGGATTATCAATTGTTCCTCCAGAAGCACTTTATTCAAAACCACCTAATCGATCCAGTGCAAGCCAAAAGCTACTCCCTGTGCTTTGGCCAGGAGAAACAACCCATAAGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTTCCAAAAAGGGTTAGTTACCGAGAATTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTTTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCCTATGCTGTACCCTATAAATTTGTTTCATATGGGGATGGTGACAGCAATCCTAGTAACACTGAGCTTGCCCGTCTTATCACAGCGGGTGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATACATCGAGTCTGGTCTAGTGGTAGTTGCATCAGTTAAGAAGACAGATTCCAATGCTTGGGCATTTTTTACGCCGTTTACACCAATGATGTGGACTGTCACAGCTGTCTTTTTTCTACTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGACCTCCCAAACAACAAATGGTCACAATTTTGTGTTTATCAACTTGCTCTTTTCTGTACTATGTAGGGGAAAATACAGTGAGCACTCTCGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCAAGTTTGACATCAATCCTCACAGTTAAACAACTTTCTTCACCTGTCAAAGGCATTGAAAGTTTAAGAAGTAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACTCGAAATTATTTAATTGATGAAATTGGTATTGATGAATCCAGACTAGTTCCTCTGAAAACACCAGAAGAAACTGCAGAAGCACTTAAGAAAGGTCCCCAGAAGGGTGGTGTTGCTGCATATGTTGACGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTGGAGTTGGCAGAGAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGCCTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAACCTGAGAAGCTTTTGGGGCCTCTATCTGGTGTGTGGATTAGCATGTGTGCTTGCTCTCCTCATATATTGTATTCAGACCATGAGGCAGTACTCCAAGCACCGCCCCGAGGAGCTTGAGTCTTCTGGCCATGGCTCAGGATCTTCGTGTCTGCGCACATTCCTTACATTCATAGATGAAAAGGAAGAGATAGTTAAGAGCCGCTCCAAGAGAAAGAAAATGGAGGGGATATCATAA 2724 0.4189 MIGVWLVVLMVLSKGLSSTGVVPDNFTIPSFVNIGVLYSFNTSVGRMVKTAVQAAVDDVNSDPSILANTKLKASLQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDIYEMTAIADFVNYFGWREVIAVYGDDDHGRNGIGALGDKLSERRCKISFKAPMTPEATREEITDVLVQAALEESRVVVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDIGSPLSSDATDDMQGVITLRMYIPDSERKRWFFSRWKNLTTGKTANGSQGLSTYGIFAYDTVYALAHALDAFFKQGNQITFSRDPKLSQLRGDNIHLDAVKIFNEGKLLHKYIYEVNMTGVSGLFKFTSDGDLVNPAYEIINVIGTGTRRVGYWSNYTGLSIVPPEALYSKPPNRSSASQKLLPVLWPGETTHKPRGWVFPNNGRMLKIGVPKRVSYREFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDSNPSNTELARLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFFTPFTPMMWTVTAVFFLLVGAVVWILEHRLNDDFRGPPKQQMVTILCLSTCSFLYYVGENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVKQLSSPVKGIESLRSSKEPIGYLQGSFTRNYLIDEIGIDESRLVPLKTPEETAEALKKGPQKGGVAAYVDERAYIELFLSSRCDYSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLNLRSFWGLYLVCGLACVLALLIYCIQTMRQYSKHRPEELESSGHGSGSSCLRTFLTFIDEKEEIVKSRSKRKKMEGIS 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01039 907 CDD GluR_Plant 470 812 - -
Gma16g01039 907 Gene3D - 50 400 - -
Gma16g01039 907 Gene3D - 148 425 - -
Gma16g01039 907 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Gma16g01039 907 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Gma16g01039 907 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Gma16g01039 907 SUPERFAMILY Periplasmic binding protein-like I 28 463 IPR028082 -
Gma16g01039 907 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Gma16g01039 907 Gene3D - 731 781 - -
Gma16g01039 907 Gene3D - 583 709 - -
Gma16g01039 907 PANTHER GLUTAMATE RECEPTOR 10 897 - -
Gma16g01039 907 Gene3D - 782 812 - -
Gma16g01039 907 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Gma16g01039 907 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Gma16g01039 907 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Gma16g01039 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 897 - -
Gma16g01039 907 Pfam Receptor family ligand binding region 48 410 IPR001828 -
Gma16g01039 907 Pfam Bacterial extracellular solute-binding proteins, family 3 529 812 IPR001638 -
Gma16g01039 907 PIRSF IGluLR_plant 1 905 IPR017103 -
Gma16g01039 907 Gene3D - 467 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01039 Gma-Chr16 26187568 26191631 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01039 5 907 Ion Channels AT3G51480 57.285 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01039 K05387 - gmx:100812261 1754.95