Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01026 ATGTTGGGTTGCTCAGAGATAGTGGGAAAACTGAAGAAATTTTCTTGCTTGATTGGTGTGTCTTGCAGAAACGACGATATCACTGCATCAGTGGCAGAGTTTGATGCATGGCCTTTTGAGGAGGAACACAGACGAATTATTGAAAACAGAAAGAGTGGAACAAATCTTACATGGTCTGAAGTTAATAACATGCCGTACACAGCCAAAGTGATTAGTGAAACTCTTCGTAGAGCCACAATACTACCTTGCTTTTCAAGAAAGGCATCCCAGGATTTTGAAATTAATGGTTATAAAGTTAGAAAAGGTTGGTCCATCAACCTAGATGTTGTTTCTATCCACCACGACCCAGAAGTTTTCTCAAATCCTGAAAAGTTTGATCCCTCTAGATTTGATGAACCCTTGAGGCCTTTCAGCTTTCTTGGATTTGGTAGTGGACCACGTATGTGTCCTAGAATGAACCTTGCCAAGCTTGAAATCTGTGTCTTCATCTATCACCTTATCAACAAATACACGCTGTTGATTATGGAGTCCACAAGCTCTGGGAGGCAAATAATGTTGGGAGACCAGGCTTCTAATATTTCTGTTGTTTTGATTTCTATGATAGTTGGGAATATACCGTATGATGCCACAGAGGAACAACTTATTGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGGAATGTTCTTAGATTGAGATGTGACCAGTCAAATTCTGATGCAGAGAAACAGATCGATTAA 744 0.4046 MLGCSEIVGKLKKFSCLIGVSCRNDDITASVAEFDAWPFEEEHRRIIENRKSGTNLTWSEVNNMPYTAKVISETLRRATILPCFSRKASQDFEINGYKVRKGWSINLDVVSIHHDPEVFSNPEKFDPSRFDEPLRPFSFLGFGSGPRMCPRMNLAKLEICVFIYHLINKYTLLIMESTSSGRQIMLGDQASNISVVLISMIVGNIPYDATEEQLIEICQEVGPVVSFRNVLRLRCDQSNSDAEKQID 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01026 247 SUPERFAMILY RNA-binding domain, RBD 196 229 IPR035979 GO:0003676
Gma16g01026 247 Pfam Cytochrome P450 41 178 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma16g01026 247 PANTHER CYTOCHROME P450 26 42 181 - -
Gma16g01026 247 Gene3D - 199 241 IPR012677 -
Gma16g01026 247 PRINTS B-class P450 signature 140 149 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma16g01026 247 PRINTS B-class P450 signature 86 113 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma16g01026 247 PRINTS B-class P450 signature 1 3 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma16g01026 247 PRINTS B-class P450 signature 114 129 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma16g01026 247 PRINTS B-class P450 signature 69 80 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma16g01026 247 PRINTS B-class P450 signature 149 160 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma16g01026 247 PANTHER CYTOCHROME P450, FAMILY 722, SUBFAMILY A, POLYPEPTIDE 1 42 181 - -
Gma16g01026 247 SUPERFAMILY Cytochrome P450 41 178 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma16g01026 247 Gene3D Cytochrome P450 38 197 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01026 Gma-Chr16 25863651 25866484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01026 17 180 Cytochrome P450 AT5G45340 41.808 1.40e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01026 - - gmx:102663998 387.111