Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01013 ATGCCAGAAAACTGCATAGCACCCAAATCTGAACACAGCAACACTACTCACCCTGAGGAAGGACCACCTGAGATGACTCAGACTGTCCTTCCCATACAAACAAATAAGCAATCTTTCCCAAAACTGGCTATGTACCCCATAACTTTAAAGTTTGAGGAATTGGTGTACAAAGTTAAAATAGAGCAGAAGGGTGTGTGTTGGGGGAGCACAAGGAGTTGCAAAGAGAAGACCATACTGAAAGGAGTAACAGGCATGGTTTGTCCAGGAGAAATAATGGCCATGTTGGGGCCATCTGGCAGTGGCAAAACCACACTTCTCACAGCACTTGGAGGAAGGCTCAGTGGCAAACTATCAGGAAAAGTCACATACAACAACCAGCCTTTTTCAGGTGCCATGAAAAGAAGAACAGGCTTTGTGGCACAGGATGATGTGTTATACCCTCATCTCACTGTCACTGAAACCCTTCTTTTCACTGCACTTCTGAGGCTCCCCAACACCTTAACCAAGGAAGAGAAAGTGCAGCATGTGGAGCATGTGATCAGTGAGCTAGGGTTGAGTAGGTGCAGGGGTAGCATGATTGGAGGCCCATTTTTCAGAGGGATTTCAGGAGGGGAGAGAAAGAGGGTCAGCATAGGCCAGGAAATGCTCATCAATCCAAGCCTGTTGCTGCTTGATGAGCCTACCTCAGGGTTGGACTCTACAACAGCACAAAGGATCATAACCACAATCAAAGGCTTGGCTAGTGGAGGAAGAACTGTTGTTACAACCATTCATCAACCCTCTAGTCGCCTCTATCACATGTTTGATAAAGTGGTCTTGCTTTCTGAAGGGTGCCCCATCTATTATGGCCATGCTTCATCTGCAATGGACTACTTTTCTTCTGTTGGTTTTTCAACATCCATGATTGTCAATCCTGCTGATTTAATGCTTGATCTTGCCAATGGAATTGCTCCAGACCCCTCCAAGCTTGCAACGGAACACAGTGAGAGCCAGGAAGCAGAAAAGAAGTTGGTGAGGGAAGCTTTAATCTCTGCGTATGACAAGAACATAGCCACTAGGCTGAAAGATGAGCTATGTAGCTTTGAAGTTAATAACTACAAAGTCATTAAGGATTCTTCCACAAGAAATCACATAAAACCGGAGCAATGGTGCACAAGTTGGTGGCATCAGTTCAAAGTGCTGTTGCAAAGGGGGCTGAGGGAGAGAAGGTTTGAAGCCTTCAACAGGCTGAGAATATTCCAAGTCATAAGTGTCGCTTTCCTTGGTGGACTCCTGTGGTGGCACACCCCAGAATCACACATTGGAGATCGGATAGCCCTGCTCTTTTTCTTCTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTCACATTTCCACAAGAGAGAAGAATGCTGATCAAGGAACGTTCGTCCGGAATGTACCGTCTTTCTTCCTACTTTCTGGCCAGAACAGTAGGAGACTTGCCAATAGAGCTTGCACTTCCAACTGCATTTGTCATCATAATCTATTGGATGGGAGGGCTCAAGCCTCATCCAGTTACCTTCCTCCTTTCCCTCCTTGTAGTTCTCTACAGTGTCCTTGTCTCTCAAAGCCTTGGCTTAGCATTTGGCGCCATTTTGATGGAGGTCAAACAGGCCACAACTTTAGCTTCTGTGACAACCCTTGTGTTCCTCATTGCTGGAGGGTACTACATACAACAGATCCCTCCCTTCATAGAGTGGCTCAAGTACTTGAGCTATAGCTACTATTGTTACAAGCTTCTTGTGGGTGTGCAGTTCAATGATGATGATTATTATGAGTGCTCAAAGGGGGTGTTGTGCAAAGTTGGAGAGTTTCCTCAAATCAAATCAGTGGGTTTGAATCACTTGTGGGTTGATGTGACTATTATGGCCATGATGTTGGTAGGTTACAGACTAATTGCTTATTTAGCACTACTGAGAGTGAGGTAG 1956 0.4545 MPENCIAPKSEHSNTTHPEEGPPEMTQTVLPIQTNKQSFPKLAMYPITLKFEELVYKVKIEQKGVCWGSTRSCKEKTILKGVTGMVCPGEIMAMLGPSGSGKTTLLTALGGRLSGKLSGKVTYNNQPFSGAMKRRTGFVAQDDVLYPHLTVTETLLFTALLRLPNTLTKEEKVQHVEHVISELGLSRCRGSMIGGPFFRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIITTIKGLASGGRTVVTTIHQPSSRLYHMFDKVVLLSEGCPIYYGHASSAMDYFSSVGFSTSMIVNPADLMLDLANGIAPDPSKLATEHSESQEAEKKLVREALISAYDKNIATRLKDELCSFEVNNYKVIKDSSTRNHIKPEQWCTSWWHQFKVLLQRGLRERRFEAFNRLRIFQVISVAFLGGLLWWHTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTVGDLPIELALPTAFVIIIYWMGGLKPHPVTFLLSLLVVLYSVLVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYLSYSYYCYKLLVGVQFNDDDYYECSKGVLCKVGEFPQIKSVGLNHLWVDVTIMAMMLVGYRLIAYLALLRVR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01013 651 Gene3D - 65 295 IPR027417 -
Gma16g01013 651 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 648 - -
Gma16g01013 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 294 IPR027417 -
Gma16g01013 651 CDD ABCG_EPDR 46 283 - -
Gma16g01013 651 MobiDBLite consensus disorder prediction 1 26 - -
Gma16g01013 651 Pfam ABC-2 type transporter 258 319 IPR043926 GO:0140359
Gma16g01013 651 Pfam ABC-2 type transporter 390 595 IPR013525 GO:0016020|GO:0140359
Gma16g01013 651 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 29 648 - -
Gma16g01013 651 Pfam ABC transporter 79 229 IPR003439 GO:0005524
Gma16g01013 651 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 301 IPR003439 GO:0005524
Gma16g01013 651 SMART AAA_5 88 278 IPR003593 -
Gma16g01013 651 ProSitePatterns ABC transporters family signature. 201 215 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01013 Gma-Chr16 25442738 25446097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01013 78 277 Calmodulin-binding Proteins AT2G36910 28.365 9.40e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01013 K05681 - gmx:100776279 1278.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01585 01 51411160 51414018 Gma16g01013 16 25442738 25446097 PCT
Gma11g00825 11 6946803 6950343 Gma16g01013 16 25442738 25446097 PCT
Gma16g01013 16 25442738 25446097 Gma01g01585 01 51411160 51414018 PCT
Gma16g01013 16 25442738 25446097 Gma11g00825 11 6946803 6950343 PCT