Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01007 ATGGATTCGGATCAAGGCAAGCTTTTCATCGGTGGGATTTCATGGGATACGACGGAGGACAAGCTCAAGGAGCATTTCGGTAACTACGGCGACGCTTTGAGCACTTCCATCATGCGGGAGAAGAACACTGGGAAGCCAAGGGGCTTCGGTTTCGTCGTTTTTGCAGATCCTAACATTCTAGATAGGGTTTTGGAAGACAAACATGTCATAGATGGCAGAACGtgtaatagacaaaaaggaatcactgaatgtggctactacgtgatgcactggatgtccacgataatcttaggatctttcaggaataattga 312 0.3462 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDALSTSIMREKNTGKPRGFGFVVFADPNILDRVLEDKHVIDGRTCNRQKGITECGYYVMHWMSTIILGSFRNN 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01007 103 PANTHER TRANSFORMER-2-RELATED 1 81 - -
Gma16g01007 103 SUPERFAMILY RNA-binding domain, RBD 3 75 IPR035979 GO:0003676
Gma16g01007 103 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gma16g01007 103 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 73 IPR000504 GO:0003723
Gma16g01007 103 Gene3D - 4 83 IPR012677 -
Gma16g01007 103 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gma16g01007 103 PANTHER - 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01007 Gma-Chr16 25096695 25098732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01007 2 54 C2H2 Transcription Factor Family AT2G19380 41.509 2.47e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01007 K14411 - gmx:102670356 214.927