Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01000 ATGTTGTGCATTCTTTGCTTGAGAGTTTGGTTTAGCTCTGGTGTTCGATTGGTTTTTAGTTTTGCTGAGTTTGATCGGGAGAAGCTAAGGGTTTGCGATTATAAAGTTATGGCACGTGTTGCTGACAAAATAAAATTGATAGATGGATCATGGGAAGCTCTTAAGCTTTCTGTAAGGATTACTGATCTTTGGTTCATTGGGATTCCCGGAAAGACTGAACAAGCCGAAATGGTGGTTGTTGATTCTGATGGAGACGAAATCCATGTTGTTTGCAAGCAGGATCAGCTGAAGTCTCGCAAGGCTGATTTGAAAGAAAATTTGACTTATGTGATGCATAATTTTAAAGTTATCAAGAATGATGGGAAATTCAGAGTTTGTGATCATGAATATAAATTATGTTTTACTGGAGTTACTGTTGTTAGGCAATGTGATATGGAACAGTTACCTTTTAGGAAATTCAGATTTGTTGCTTTTTCCAGTGTCATTGCTGGTCATTTTAAAATTGGACTCTTGGTTGATGTTATTGGCGTGGTTGATGAAGTGGTATTCCGATATGTGTCATCCAAAAATACGAGGGTTGTTTCGAATTTAAAGGATTTGAGTCTTTTAGATTTAGGGATCGAGGTTAGATCAATTTTGACGCCTATTGGACAAGGGAGTTCACAGGTTTCAGGGTCATCTCAATTATCATCAAAAGATGTGTTTCTGTCAAAGACTGAAGAGTTTGTTTGTGTTACTGTTGCCAAGATCACAACCATAGTGATGGACAACTATTCATGGTGCTATCCGGCTTGTGGTCAATGTTATAAAAAAACTGACATGCAAACTGTGCCGTTCACATGTCCGTGTGGCAAAGAGAATGATCAACCTGTACTGAGGTATCGGGTTGAGGTGATGGTTAATCACAAGGGTGAAAAAACCAAATTTTTGATCTGGGATCGTGAATGTGTACAGTTAATTGGTCAGTCAACGGATGAAGTCAACAGGCTCAAAATAGAAGATGGGGATGTTGATTTAAATGCCTCTCCTCAAGCACTAGATAGGCTATTGGGTTGTTTCCTTGCATTCAAAGTGAAGGTGCAACCAAGGTTCAGGAATTCTGTTGTTCTTAAATATTCAGATGAATCAGACTTGATCAATATTGAGCTAGATATGATTCCTGATAGTGAGCAATCAGTGTCTGTTACCGGGGATCATGACCCTCTTCTCAGGATTCCATTGACACCAACTAAGCGTGTATCTTTTGATGAGTTGGATAATGAGCGAAAAAACTTTCAGATTTCACCTGCTGAAGTTTCCTCGAACAAATTAGCTAAGCTTTCTCAGCCTGAATGA 1335 0.3888 MLCILCLRVWFSSGVRLVFSFAEFDREKLRVCDYKVMARVADKIKLIDGSWEALKLSVRITDLWFIGIPGKTEQAEMVVVDSDGDEIHVVCKQDQLKSRKADLKENLTYVMHNFKVIKNDGKFRVCDHEYKLCFTGVTVVRQCDMEQLPFRKFRFVAFSSVIAGHFKIGLLVDVIGVVDEVVFRYVSSKNTRVVSNLKDLSLLDLGIEVRSILTPIGQGSSQVSGSSQLSSKDVFLSKTEEFVCVTVAKITTIVMDNYSWCYPACGQCYKKTDMQTVPFTCPCGKENDQPVLRYRVEVMVNHKGEKTKFLIWDRECVQLIGQSTDEVNRLKIEDGDVDLNASPQALDRLLGCFLAFKVKVQPRFRNSVVLKYSDESDLINIELDMIPDSEQSVSVTGDHDPLLRIPLTPTKRVSFDELDNERKNFQISPAEVSSNKLAKLSQPE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01000 444 SUPERFAMILY Nucleic acid-binding proteins 54 143 IPR012340 -
Gma16g01000 444 Pfam Domain of unknown function DUF223 76 164 IPR003871 -
Gma16g01000 444 Gene3D - 216 379 IPR012340 -
Gma16g01000 444 Gene3D - 40 143 IPR012340 -
Gma16g01000 444 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 48 334 - -
Gma16g01000 444 PANTHER REPLICATION FACTOR A 1, RFA1 48 334 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma16g01000 444 Pfam Replication factor-A C terminal domain 248 335 IPR013955 -
Gma16g01000 444 CDD RPA1_DBD_A_like 55 140 - -
Gma16g01000 444 SUPERFAMILY Nucleic acid-binding proteins 239 367 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01000 Gma-Chr16 24381087 24390521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01000 213 338 Core DNA Replication Machinery Family AT5G08020 31.655 9.89e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01000 - - gmx:102669158 737.258