Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00986 ATGGGTTCCAATGGTAGCAAAGCCACTTCTTCGTCTTTCGGTAGTTCTTCTTCTTCATCGTCTTCTTCGGGGAGTTTAAGGAAAGGTCGATCTAAGGGCCTTAAAGTTTTTCAATCTTGTTGTCTTGGAACAACTTCTGGTTCTCACGACAGTGATAATGAAGACCAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATGTAACATATGCTGATGGCAATGGAACAGACTCAGATGAGGTGAAAACAGAGTCATTTAGAAAGGTTATAGCTGGTGAAATGACTTGTGTGCCTTCTAACATTGACCTTGATGGATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGGAAGCATCTCTGTCCATTCTTCTTCAACTCATTCCTTGAACCCTACAAGTCATTGCCTTTCTCGGTTTAGCCTCATTCCTGGTAATGTAAGCTTCAGACTTAGCAGAACCACTAGTTTGGGGTCATCAAGGCCTCGTCCTGTTTCTTCTGCCAATCTCTCAATATTTGACAATGAAGATGAGCATAATCTCAATCCTGGATCTCCTGGAAGATTGATAAACAGAAGTGAAACACAACAATGTAGTAACTTGCTTCCCGCATCTTTTTCCAATCAAATACATGCACAGTGTCATGAAGACGCTTCTAATAATTCAAGGTCAAATGTCCCGACATCAGGCGTAGTTGGAAACTTGCAGAGCTATCCCACAGATGGAGTATGTGCAAGAGAAAGGCCAGACGTGAACTTATTTTCTCTGAGAATTCAAACAGACACAGAAAATGTTGACAATGACACAAGACATATTGATCAACGAATTGGTGCTCGAGAACCAGTTGAACGGAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCAATCAACATTGTCTGACCTCACCTTTTTCCCTTTGCAACAAGAGAGAGAGCTGAGAGATGCTAGCCTTCCTAGCCAAGATATTATTGACAGGCAAGCAGTGGAGGGAGATTCAAGAGTGTCACCATCTGATCATAGTACCATTAATTCTTCAACATCTAGATATCCTCCATCTAGTATGTCTAACTCCATCTTTAGCATCCAAGACTATGAGGTTGAGACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGCCCCAGGTTCATGCTCTCCAGCGATTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGAACGTGTGTGTTGTCTGGTCAACATAGAAATGGTCGTTGTACATGCCGAATCAATAATCGTAACACTAATTCAAATGATGATACTGGTGCTAGAGCTAACATATCTAGAATTGTTATGCTTGCTGAAGCCCTATTTGAGGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGACCTGTTCCTGCACCTAATGATGTTGTCGATTCCTTGCCTGTCAAATTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAACATGCGAGTACTACCGTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTTTGTCGAGGGGACATATGCATATCTGATTCAACGCCAACAGAGAACTCGAGTGACTAG 1746 0.4233 MGSNGSKATSSSFGSSSSSSSSSGSLRKGRSKGLKVFQSCCLGTTSGSHDSDNEDQVCDQNKVNGSDVTYADGNGTDSDEVKTESFRKVIAGEMTCVPSNIDLDGWGETSIPNTSSRTGSISVHSSSTHSLNPTSHCLSRFSLIPGNVSFRLSRTTSLGSSRPRPVSSANLSIFDNEDEHNLNPGSPGRLINRSETQQCSNLLPASFSNQIHAQCHEDASNNSRSNVPTSGVVGNLQSYPTDGVCARERPDVNLFSLRIQTDTENVDNDTRHIDQRIGAREPVERNVRFSRTLSVGRLRDRVLRQSTLSDLTFFPLQQERELRDASLPSQDIIDRQAVEGDSRVSPSDHSTINSSTSRYPPSSMSNSIFSIQDYEVETSRLREGRYQDLLEHRSNFLERRRRIRPQVHALQRLGSRFENLSGHDRTCVLSGQHRNGRCTCRINNRNTNSNDDTGARANISRIVMLAEALFEVLDEIHLQSVVLSSRPSVSSIGPVPAPNDVVDSLPVKLYEKLHKHQEDAAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPTENSSD 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00986 581 MobiDBLite consensus disorder prediction 58 73 - -
Gma16g00986 581 CDD RING-H2_PA-TM-RING 522 565 - -
Gma16g00986 581 ProSiteProfiles Zinc finger RING-type profile. 523 565 IPR001841 -
Gma16g00986 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 569 IPR013083 -
Gma16g00986 581 SMART ring_2 523 564 IPR001841 -
Gma16g00986 581 MobiDBLite consensus disorder prediction 1 28 - -
Gma16g00986 581 Pfam Ring finger domain 522 565 IPR001841 -
Gma16g00986 581 MobiDBLite consensus disorder prediction 343 364 - -
Gma16g00986 581 MobiDBLite consensus disorder prediction 1 31 - -
Gma16g00986 581 MobiDBLite consensus disorder prediction 155 179 - -
Gma16g00986 581 SUPERFAMILY RING/U-box 501 572 - -
Gma16g00986 581 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 580 - -
Gma16g00986 581 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 580 - -
Gma16g00986 581 MobiDBLite consensus disorder prediction 336 364 - -
Gma16g00986 581 MobiDBLite consensus disorder prediction 155 192 - -
Gma16g00986 581 MobiDBLite consensus disorder prediction 44 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00986 Gma-Chr16 23335705 23341759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00986 273 572 C3H Transcription Factor Family AT5G45290 64.169 2.68e-112 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00986 - - gmx:100800896 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01560 01 51088513 51093848 Gma16g00986 16 23335705 23341759 PCT
Gma09g02015 09 45744963 45749165 Gma16g00986 16 23335705 23341759 PCT
Gma16g00986 16 23335705 23341759 Gma01g01560 01 51088513 51093848 PCT
Gma16g00986 16 23335705 23341759 Gma09g02015 09 45744963 45749165 PCT