Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00978 ATGATCTTGGTACTCATTTGTTACCACCAGCAACCCAATTCTACAAGACACTTTTTCCTTCACACAATGAAGCATCCATCAAAGCCATGGAAGCCATTAACCACAAACTGCTGCACAATTCAAAACCAAACTATCTTTGGCAATCTCAAGCCCTCAAGTTCAGATATATCCAATGATATTGCACAATTACCAAATTCATTTCATTGGATGTCTTTCTCTGATCTTGGTCATTTTTCGTCCATAAGATCAAATGAAGATCAAATTGCAAAGTCGTTTGCTTCGGATTTATATGATTTTCAGCTCAGTGACCTGCGTGCCATTACTCAGAATTTCTCGAACAGTTTCTGGCAGGGTGAAGGAGGGTTTGGAACAGTTCATAAGGGCTATATAGATGCTAACCTGAGACCGGGTTTGAAAGCTCAACCTGTTGCTGTTAAGATTCTCAACGTTCAAGGTTTACAAGGACACCGTGAGTGGCTTGCAGAAGTGATATTTCTCGGGCAGCTAAGACACAAAAATTTGGTCAAGTTGATTGGATATTGTTACGAGGACGAAGAAAGGCTACTTATCTACGAATTTATGCCAAGGGGAAGCTTGGAGAATCACTTGTTCAGAAGAAAAACATCACTGCCTTGGGCAACAAGATTAAAAATTACAATAGGTGCAGCTAAAGGTCTTGCCTTCTTGCATGCAGCTAAGAATCCAGTCATTTTCCGAGACTTCAAGACTTCCAATATCTTGCTTGATTCAGATTTCACAGCCAAACTTTCGGATTTTGGACTTGCAAGATTGGTGTCAGAGGGATCAAAGTCACATGTTACAACCAGAGTTTGGGGCAACTATGGCTACGCAGCCCCAGAATACATCTCCAAGGGGCACTTGACAACAAAAAGTGATGTCTATAGCTTCGGGGTTGTTCTGATAGAACTGCTGACAGGAAGGAGAGCAATAGACAAAAAAAGACCAAAGACTGAGCAAAACCTCGTGGATTGGTCAAAACCTTACTTGAGCAATAGCAAGAGGTTGAGGTGCATTATGGATCCAAGGCTTGTTGGCCAATATTCTGTTAAGGGTGCAAAGGAGATGGCCCTTTTGGCATTGCAGTGCACAAGTTTGAATCCCAAAGACAGGCCAAGAATACAAACTGCTGTTGAAACTCTTGAAAACTTGCAAAAGTTTAAGGACATGGCAGTTACATATGGACACTGGCCTCAATGTGCTAGAAATGGAGCATCAAATAAGGCTGGAGAAGATGTGGTTACGACACAGTTGGAACAGTAG 1281 0.4184 MILVLICYHQQPNSTRHFFLHTMKHPSKPWKPLTTNCCTIQNQTIFGNLKPSSSDISNDIAQLPNSFHWMSFSDLGHFSSIRSNEDQIAKSFASDLYDFQLSDLRAITQNFSNSFWQGEGGFGTVHKGYIDANLRPGLKAQPVAVKILNVQGLQGHREWLAEVIFLGQLRHKNLVKLIGYCYEDEERLLIYEFMPRGSLENHLFRRKTSLPWATRLKITIGAAKGLAFLHAAKNPVIFRDFKTSNILLDSDFTAKLSDFGLARLVSEGSKSHVTTRVWGNYGYAAPEYISKGHLTTKSDVYSFGVVLIELLTGRRAIDKKRPKTEQNLVDWSKPYLSNSKRLRCIMDPRLVGQYSVKGAKEMALLALQCTSLNPKDRPRIQTAVETLENLQKFKDMAVTYGHWPQCARNGASNKAGEDVVTTQLEQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00978 426 CDD STKc_IRAK 118 390 - -
Gma16g00978 426 Gene3D Phosphorylase Kinase; domain 1 73 193 - -
Gma16g00978 426 Gene3D Transferase(Phosphotransferase) domain 1 194 402 - -
Gma16g00978 426 SUPERFAMILY Protein kinase-like (PK-like) 91 388 IPR011009 -
Gma16g00978 426 PANTHER OS01G0588500 PROTEIN-RELATED 55 408 - -
Gma16g00978 426 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL15-RELATED 55 408 - -
Gma16g00978 426 ProSiteProfiles Protein kinase domain profile. 111 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00978 426 Pfam Protein tyrosine and serine/threonine kinase 118 387 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00978 Gma-Chr16 23060345 23065900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00978 83 403 Glycoside Hydrolase AT3G07070 46.319 1.52e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma16g00978 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00978 - - gmx:100804970 801.586