Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00975 ATGGTGATGATGACACTTGTGCTGTGTGCTTGGACGAGGACGCTGCCGGAGTGCATGCATTCCTTCCACGTGGTGTGCATAGATACGTGGCTCTATTCCCATTCCAACTGTCCCGTTTGCCGGACTCACGCCACGCCTTCGCCGGCGGTGGAGCGCCGGTTGCCGGAGTTGAATGCGCAACACACCATAGATATCATGCAAGTAGCTCGCGTTCAAAATGGGTCAGCCCGACTTGAACTACTGAGGTGA 249 0.5582 MVMMTLVLCAWTRTLPECMHSFHVVCIDTWLYSHSNCPVCRTHATPSPAVERRLPELNAQHTIDIMQVARVQNGSARLELLR 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00975 82 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 56 IPR044675 -
Gma16g00975 82 SUPERFAMILY RING/U-box 11 47 - -
Gma16g00975 82 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Gma16g00975 82 ProSiteProfiles Zinc finger RING-type profile. 17 41 IPR001841 -
Gma16g00975 82 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 13 56 - -
Gma16g00975 82 Pfam RING-H2 zinc finger domain 15 41 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00975 Gma-Chr16 22969622 22969870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00975 13 51 C3H Transcription Factor Family AT3G03550 66.667 5.01e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00975 - - gmx:100809606 116.701