Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00972 ATGCACCAATCATGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGGTAAGCAATGCCCGAAAGACCAGAAGACGGTTGGCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCCAGGCCTACTGCTGGATCTCTCAGGCCTATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATCACCGCAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGAGGCTCAAAACCTACAAGGCTAAGTTGGTTGTGTTCCCAAGAAGGGCACACAAGGTCAAGGCTGGTGATTCTAGCCTTGAAGAGCTGGCAAATGCCACTCAAGTCCAGGGTCCATTCTTGCCCATTGTGAGGGAGAAGCCAACTGTTGACCTTGTTAAGGTAACAGATGAAATGAAGGCCTTCAAAGCATACTATAAGCTTCGTCTTGAACGCACCAACAAACGCCACCATGGTGCCCGCCTAAAGAAGGCTGCTGAAGCAGAGAAGGAGGACAAGAAATAA 606 0.4901 MHQSCSHTSSPFQLKSHPQVSNARKTRRRLARQKKAVKIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRAHKVKAGDSSLEELANATQVQGPFLPIVREKPTVDLVKVTDEMKAFKAYYKLRLERTNKRHHGARLKKAAEAEKEDKK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00972 201 PANTHER 60S RIBOSOMAL PROTEIN L13 22 201 - -
Gma16g00972 201 Pfam Ribosomal protein L13e 22 179 IPR001380 GO:0003735|GO:0005840|GO:0006412
Gma16g00972 201 MobiDBLite consensus disorder prediction 182 201 - -
Gma16g00972 201 MobiDBLite consensus disorder prediction 1 20 - -
Gma16g00972 201 Hamap 50S ribosomal protein L13e [rpl13e]. 39 122 IPR001380 GO:0003735|GO:0005840|GO:0006412
Gma16g00972 201 PANTHER 60S RIBOSOMAL PROTEIN L13 22 201 IPR001380 GO:0003735|GO:0005840|GO:0006412
Gma16g00972 201 MobiDBLite consensus disorder prediction 1 33 - -
Gma16g00972 201 Gene3D - 161 201 - -
Gma16g00972 201 ProSitePatterns Ribosomal protein L13e signature. 64 78 IPR018256 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00972 Gma-Chr16 22916263 22919889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00972 23 186 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 84.146 7.29e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00972 K02873 - gmx:100782333 327.791