Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00967 ATGGCTAGAGGAAAGATCCAAATCAAGAGGATAGAGAACACCACCAAGAAGGCCAACGAGCTCACTGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACAAGATCGAGCAATCAACAAAGCAGTTCTTCGATCAATACCAGATGACTCTGGGAGTTGATATTTGGAACTCTCATTACGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGAGGTGAATAGGAATCTTCGTAAGGAATTTAGGCTCCTTGAGGAAGGAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGCTTAGAGAACTAGTACTACAGGATATTGGTACTTATGACTGGCCAGTTGAAGAATGCCACTATTGCTGTCGATGCCTTGTCTATTTAGTGAACATTGACACCGCTGGAATCACTGCTCTAGAGGAACTGCATAAAAGTTTGTCTTCACATGGAAAACAGGTTAGCTTCCTCCTCAAGATGCTGCCTTAG 507 0.4339 MARGKIQIKRIENTTKKANELTVLCDAKVSIIMFSSTGKLHKIEQSTKQFFDQYQMTLGVDIWNSHYENMQENLKKLKEVNRNLRKEFRLLEEGMDKAAKVVRERKLRELVLQDIGTYDWPVEECHYCCRCLVYLVNIDTAGITALEELHKSLSSHGKQVSFLLKMLP 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00967 168 Gene3D - 7 89 IPR036879 GO:0003677|GO:0046983
Gma16g00967 168 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Gma16g00967 168 PANTHER APETALA3 1 131 - -
Gma16g00967 168 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Gma16g00967 168 SMART madsneu2 1 46 IPR002100 GO:0003677|GO:0046983
Gma16g00967 168 PRINTS MADS domain signature 9 24 IPR002100 GO:0003677|GO:0046983
Gma16g00967 168 PRINTS MADS domain signature 24 45 IPR002100 GO:0003677|GO:0046983
Gma16g00967 168 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 131 - -
Gma16g00967 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 41 IPR002100 GO:0003677|GO:0046983
Gma16g00967 168 Coils Coil 60 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00967 Gma-Chr16 22814904 22817948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00967 1 110 MADS-box Gene Family AT3G54340 48.252 4.19e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma16g00967 SRF-TF 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00967 K09264 - gmx:121173957 176.022