Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00965 ATGGAGTCCGGTAAGAACGAGCGTGTGACGATTCGCGAGTTCTGCGCGAATGGAAGTTGCATGGAAGCGAAGGAACTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAAGCAGAATCGGCATTGCGTGAAGGGTTGTCACTAAATTTTGAGGAAGCAAGGGCTCTTCTTGGAAAGTTAGAGTATCAGAGAGGTAATGTTGAAGGTGCACTTCGTGTGTTTGATGGGATTGATCTTGAAGCAGCCATACAGCGATTGCAAAGTTCCCTTTCTGAAAAAACACCTGTTAAGAAAGGCCCCACTCGCAGTGAATCACCTTCCTCCGTCTCTCAGCATGCTGCAACTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAAAAACTGGACAAATTTACTGAAGCTGCTAAAGAATGCAAGCGTGTTCTTGATGCCGTTGAGAAGATATTTGGTCAGGGTATACCTGATACACAAGTGGACAACAAATTGCAGGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAGACTGGTTGCTATAATGAGGCATTGTCTGCTTATAGGAATGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGATGGCATTTGCTGTGTTTATGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCCGTTCAGATTGATGGGTCCTATGTACCCAAAAATAATCTGGAAGAGGCAATTCTGCTTCTAATGATTCTTTTGAGAAAGTTTAGCCTTGGTAAGATAAATTGGGATCCTTCTATTATGGAACACCTGACTTTTGCACTTTCAGCATGTGGTCAAACTTCTATTTTGGCAAAGCAATTTGAAGAGTTGGCACCTGGTGTATATCACCGTATTGACCGATGGAATTTTTTAGCTCTATGTAATAGTGGAGCTGGAGAAAATGAAAGTGCTTTGAATCTGCTAAGGATGTCATTGCATAAACATGAAAGACCAGATGACCTTATATCATTATTATTGGCTGCGAAGATTTGCAGTGAGGATCCTCATCATGCTGCTGAGGGAGCAGGATATGCACAGAGAGCAATCAATATTGCTCAGGGCTTAGATGGGCATTTGAAAGGTGTGGGTCTTCGGATGTTGGGGCTTTGCCTGGGAAAACAAGCTAAGGTTTCTTCTTCCGACTTTGAGAGGTCTATGCTTCAATCCAAAGCTCTGCAATCATTGGAGGAGGCAGTTAGACTGGAGCAAAACAATTATGATCTAATTTTTGAGCTGGCTATTCAATATGCTGAGCACCGAAATTTAACTGCTGCTTTATCCTGTGCCAAGCAGTTCTTTGACAAAACTGGTGGCTCTAAATTAAAAGGTTGGAGATTGCTTGCTCTGGTTTTGTCTGCACAAAAAAGATTTTCAGAGGCTGAAGTGGTGACTGATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAGGGGCCACTACTCAGGCTGAAAGCCAAGCTGAAGATCTCCCAATTACGACCCATGGATGCTATTGAAATTTACCGTTACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCGTCTGGGCCTCTCAAACTTAGTTCACAGGTTGAGGATTATACAATAAATGAATTTGAAGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGAGAATTGAAGGAATATTCAGCAGCAACAATTCACACTGAAGGTATTATGTTCGATGGTCGTGGAGAATATCAAGAAGCTCTTATTGGTACTTTCAATGCGGTCCTATTTGAACCAAACTATGTGCCAAGCAAGATCTTGATGGCTTCTTTGATACTGAAAATGGGTTTTAAAGCTTCACCTGTTGCTAGAAGCTTACTTTCTGATGCACTTAGAATAGAACCCACTAACCGTATGGCTTGGTATTACTTGGGATTAACTCACAAGGCTGACGGCCGATTAGTGGATGCTGCAGATTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCCGATCCCATTGAAAATTTCAGCTGTATGCTTTGA 2085 0.4288 MESGKNERVTIREFCANGSCMEAKELEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLEAAIQRLQSSLSEKTPVKKGPTRSESPSSVSQHAATLVLEAIYLKAKSLQKLDKFTEAAKECKRVLDAVEKIFGQGIPDTQVDNKLQEIVSHAVELLPELWKQTGCYNEALSAYRNALLSQWNLDNDCCARIQMAFAVFMLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLRKFSLGKINWDPSIMEHLTFALSACGQTSILAKQFEELAPGVYHRIDRWNFLALCNSGAGENESALNLLRMSLHKHERPDDLISLLLAAKICSEDPHHAAEGAGYAQRAINIAQGLDGHLKGVGLRMLGLCLGKQAKVSSSDFERSMLQSKALQSLEEAVRLEQNNYDLIFELAIQYAEHRNLTAALSCAKQFFDKTGGSKLKGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLLRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSSGPLKLSSQVEDYTINEFEVWHGLANLYASLSHWKDAEICLQKARELKEYSAATIHTEGIMFDGRGEYQEALIGTFNAVLFEPNYVPSKILMASLILKMGFKASPVARSLLSDALRIEPTNRMAWYYLGLTHKADGRLVDAADCFQAASMLEESDPIENFSCML 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00965 694 Coils Coil 21 41 - -
Gma16g00965 694 SUPERFAMILY TPR-like 407 682 IPR011990 GO:0005515
Gma16g00965 694 Gene3D Tetratricopeptide repeat domain 632 690 IPR011990 GO:0005515
Gma16g00965 694 PANTHER CALMODULIN-BINDING PROTEIN 1 693 - -
Gma16g00965 694 Gene3D Tetratricopeptide repeat domain 27 213 IPR011990 GO:0005515
Gma16g00965 694 SUPERFAMILY TPR-like 118 444 IPR011990 GO:0005515
Gma16g00965 694 SUPERFAMILY TPR-like 497 630 IPR011990 GO:0005515
Gma16g00965 694 Gene3D Tetratricopeptide repeat domain 454 603 IPR011990 GO:0005515
Gma16g00965 694 Gene3D Tetratricopeptide repeat domain 238 453 IPR011990 GO:0005515
Gma16g00965 694 PANTHER PROTEIN NPG1 1 693 IPR043376 -
Gma16g00965 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Gma16g00965 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Gma16g00965 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Gma16g00965 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Gma16g00965 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Gma16g00965 694 SMART tpr_5 652 685 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00965 Gma-Chr16 22778630 22784338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00965 3 694 Calmodulin-binding Proteins AT2G43040 71.511 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00965 K21843 - gmx:100811897 1345.87