Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00937 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCGGGTTGGCGGTTCCTATGATGAGAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCCGTTTACCAGAGAAATAATTTCCCCCGTGACATTTTGGATAGGGAGGCTTATCTGCCGCCAGGACCTCCTGTTGGCCACTGGAGTCAAACCAAACGGAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCCATCATGAATCATATGATCAGATTGATGGTTTCAGGGATCGTGAGATTGACACCTATCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATGATTATGACTACAAGTCCCGAGCATCCTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATCATGATCATGGTCGACATAGTTATGATTCTGATTATGAAAGAAGTAGTAGAAGAGATAGTAATTGGAGGCGACGCAAATCACGTGATCGGGAACGAGTTAAGAGTGGTCATAGTCGGGAAAGAGATCTGAGTCCGCATAGGAGACATGAGCGTTCTCATTCACATTCACATTCTCGTTCTCGATCTTGTTCACGTTCTCGATCCCCGTCTCATTCCCATTCCCGGTCTCAATCTCGTGGATATGATGACCATCCAAGATCTAGGTCCCCCCGAGGTCGAAGCCATGGTCGAAGTTATAGGGAAGATAGCTATACTGACAGTCGATATGACAAAAGTGAAAGACGTAGGGATCGTGATGATAAACGTCAGTGGGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCTGAATGTGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTGGGAGCTGCCCAAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACAGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATGATGGTTCCATCCGATTGGATGTGCACTATATGTGGCTACATAAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACTGATGATGCCCCTGCAGCAGATATTTCATTGTCTAATTCAGCAGCTATAGGAAAGAAAGGTTCAGAAGCAGGTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTGGGCCCTGGATCAGGAACATCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATCGAGGCTGCGACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAACCCAGATGCCAAACAATCTACTGGTCCAGAGCAAACTGGTGCAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCATCTAATGAGTCTGAACCTTCTAAGGTATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTGCTGTTGCACCGGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCAGCAACTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATACTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAACAAAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGACATTATGCAAAGAATAAGTTAAAAAATGAGACTATGGTAAGGGAAAGTAATGCTTCTAATCCAGGAAGTCACACAACTCTTGCCCAGAGTGCTGCTATTGATTCTCAGGCACAGCCACAGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAAGCAGATACTTATTCAGGTTCTACATCTGTTGCATCATCTATGCCAAGTTTATCTACAGCAAATGTTGATGCACAGACAGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACAATCTGTGATTGTTGGAAGTGGTCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCACAAGGAACAACCTCAAACAACTTACCGGGACCGTGCAGCTGAGAGGAGGAGTTTATATGGCTCATCATCTTCAGTTGGAAATGATTTAGCTGACCTTGAAATTGGCGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCCATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCATAGTTGGAGATGCCAACCTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTGGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAAAATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAAGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAGATGTCAGAGAGTTAA 3201 0.4477 MDPGRYALHQGWDNNSALEGYSTVHDPNFRVGGSYDERRFIDERYPRDAVYQRNNFPRDILDREAYLPPGPPVGHWSQTKRRGYDEDYPLDRESRRFQRPHHESYDQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFVGHDRDDYAYDDDYDYKSRASSHHRREDSHERDHDHGRHSYDSDYERSSRRDSNWRRRKSRDRERVKSGHSRERDLSPHRRHERSHSHSHSRSRSCSRSRSPSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREDSYTDSRYDKSERRRDRDDKRQWEHYSVAPSATVVVKGLSQKTTEEDLYQILAECGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSMMVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDAKQSTGPEQTGAEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTDQNQNKASNESEPSKVSDGSGSKKVISAPATAVAPVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSSGHYAKNKLKNETMVRESNASNPGSHTTLAQSAAIDSQAQPQPVSNSLGGTVMGVIRGSGRGVVKADTYSGSTSVASSMPSLSTANVDAQTVATPFRTDVSALGSYTQSVIVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRIVGDANLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00937 1066 SMART G-patch_5 986 1032 IPR000467 GO:0003676
Gma16g00937 1066 MobiDBLite consensus disorder prediction 130 302 - -
Gma16g00937 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 373 IPR000504 GO:0003723
Gma16g00937 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 537 IPR000504 GO:0003723
Gma16g00937 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 392 IPR000504 GO:0003723
Gma16g00937 1066 SMART zf_4 416 440 IPR001876 -
Gma16g00937 1066 CDD RRM1_RRM2_RBM5_like 310 390 - -
Gma16g00937 1066 MobiDBLite consensus disorder prediction 229 247 - -
Gma16g00937 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 549 IPR000504 GO:0003723
Gma16g00937 1066 SUPERFAMILY RNA-binding domain, RBD 467 556 IPR035979 GO:0003676
Gma16g00937 1066 ProSitePatterns Zinc finger RanBP2-type signature. 418 437 IPR001876 -
Gma16g00937 1066 PANTHER FI21118P1 222 1063 - -
Gma16g00937 1066 PANTHER FI21118P1 38 219 - -
Gma16g00937 1066 MobiDBLite consensus disorder prediction 212 228 - -
Gma16g00937 1066 CDD RRM1_RRM2_RBM5_like 467 547 - -
Gma16g00937 1066 Pfam OCRE domain 611 659 IPR041591 -
Gma16g00937 1066 Gene3D - 410 444 - -
Gma16g00937 1066 MobiDBLite consensus disorder prediction 255 302 - -
Gma16g00937 1066 Pfam G-patch domain 989 1030 IPR000467 GO:0003676
Gma16g00937 1066 MobiDBLite consensus disorder prediction 663 684 - -
Gma16g00937 1066 ProSiteProfiles G-patch domain profile. 988 1034 IPR000467 GO:0003676
Gma16g00937 1066 MobiDBLite consensus disorder prediction 793 825 - -
Gma16g00937 1066 MobiDBLite consensus disorder prediction 138 205 - -
Gma16g00937 1066 PANTHER RNA-BINDING PROTEIN 222 1063 - -
Gma16g00937 1066 PANTHER RNA-BINDING PROTEIN 38 219 - -
Gma16g00937 1066 SUPERFAMILY RNA-binding domain, RBD 300 397 IPR035979 GO:0003676
Gma16g00937 1066 MobiDBLite consensus disorder prediction 896 918 - -
Gma16g00937 1066 SMART rrm1_1 470 545 IPR000504 GO:0003723
Gma16g00937 1066 SMART rrm1_1 313 388 IPR000504 GO:0003723
Gma16g00937 1066 MobiDBLite consensus disorder prediction 756 825 - -
Gma16g00937 1066 MobiDBLite consensus disorder prediction 587 609 - -
Gma16g00937 1066 CDD OCRE_SUA_like 608 660 IPR035623 -
Gma16g00937 1066 MobiDBLite consensus disorder prediction 663 682 - -
Gma16g00937 1066 Gene3D - 453 582 IPR012677 -
Gma16g00937 1066 Gene3D - 277 409 IPR012677 -
Gma16g00937 1066 SUPERFAMILY Ran binding protein zinc finger-like 408 444 IPR036443 -
Gma16g00937 1066 MobiDBLite consensus disorder prediction 756 786 - -
Gma16g00937 1066 ProSiteProfiles Zinc finger RanBP2 type profile. 414 443 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00937 Gma-Chr16 22038013 22045644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00937 311 533 Eukaryotic Initiation Factors Gene Family AT2G36660 25.200 5.12e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00937 K13094 - gmx:100777686 1898.63