Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00934 ATGGAAAAAGACCAAGAGGCTCAGCATCATAGGGAAAATCAAGGGTCTTTGGTTACTACCGTGAAAGTAGAAGGGTCAGAGGCTGTTAACAACAATGAGCATCGTTCTTGGGTGTGTCATATCTGCAAGAAAGGGTTCGGCTCAGGTAAAGCACTTGGTGGACACATGAGAATACACAACCTTTCCAAGAAGCAGCAGGTTCATAGGGCTAAACAAGGCACTACTATTGTTGCAAAGCCCAAAACCAACAAATGGGTGTTTGTGAGTGGCAACCCCACTTGTTCTCTTTGTGGAAAGAGCTTTTCTTCCATGAAGTCCTTGTTCGGGCACTTGAGGTCTCACCCTGAGAGGATGAGGAAGGGGATTCAAAACAACACTCCTTCAATCAATGGTGCATCCTCCAATTCCACATCTTCATCAACCCTTTCTGATGACTCTACTGCTGTTGATCTCTCCCAAGCTCTCAGGGGTTGTTGGTCTGTCTCTGCCAAGAGAGGCCGCAGAAGCCCTTCTTGTAGCAAGTCAAATTCTGGTTTAGAAGATGATGGGGAAATTGAGCCACGTATGCAAGAGGCTGTGTATAACCTCATGTTGCTGGCAAGTGGGAATCCCAAGCGGGAGGAAGAGCTTGACGGTGATCAGATTGAAGAGAAGAAGCTGTTAAACCCAGTTTTTGGGGATTCTGATGAGATGAAGAGAGATAGAAAGAGAGTGACAAAGAAAATGAAATTAACAGAATTAGAAGCAGCTGAGGAGGGGGACAAGCTATGCAGAATATGCAATACAACTTTCCCAAGTCCCCAAGTTTTAGAGGGTCATCTATGCAGCAGCAAAATTTTTAAGAACATTCAAGTCATGGATGAATCTGAATCAGATGGTGTGTTAGCCACAAAAGAGGAGCATCATGCCAAAAAACCAACCATGCAAGGAGAGGAAACAACTGTTCTTGGGGGTAATGCTGTGGAAGCCATTAGAGGGTATCATTGTAAAATTTTCATCAAGACTTTCTCAACTGGTCAGGTCTTTGGGGACCACAAGATATCTAATTGGACCAGCACGGCAGAAGCTCAGTCATCAGCTCAAGCAACTTCCTCACCTGTGGGAAATGCTCAGAATTGTTCCAAGATTTTGACTTTTGATCTTAATCAGCTTCCTGCTATGGATGGACAAGATGGTGTTCAATCAGACTTGTTTATTCCTGCCAATATTGGCATCGCATTCTATTGGGCAAAGATAAAGGTCATGAGCTCTTGCCTTTTCTGTGTTTTCTTTCTTAATGTGAAGCATGATGTGTCCCGCAAACTTGCTGTGAAGGAAAGATCCGAAAAGGCATTGTGGGGCTTTCATTGGGGATATAAATGTTACCCTTTTCTGTgccacgcagtagatcctctgcctcatggtcacgccccgcagccccgagtcgtccctcaggccccgcagacggatatcccttgcgtgccggagccaggagcatcgtcgacatctacggaggagcccagacatgcagtggaagtttgtgatgacattgctgagcggttggagcgccatctgagtctaggggtggtcacgcttggctcatcgacacatgagGTGGCAGAGAACAAAAATGTAGTGTGCTTGGAATGGTGGAGGCGTTCGACGTCGACAGAGGCTATGGTGTCCAGCGTTGACGGAGGCTATGGTGTATGGCGTCCACAAAAGAAGTTGCAGGGGTTGGAGTGA 1725 0.3913 MEKDQEAQHHRENQGSLVTTVKVEGSEAVNNNEHRSWVCHICKKGFGSGKALGGHMRIHNLSKKQQVHRAKQGTTIVAKPKTNKWVFVSGNPTCSLCGKSFSSMKSLFGHLRSHPERMRKGIQNNTPSINGASSNSTSSSTLSDDSTAVDLSQALRGCWSVSAKRGRRSPSCSKSNSGLEDDGEIEPRMQEAVYNLMLLASGNPKREEELDGDQIEEKKLLNPVFGDSDEMKRDRKRVTKKMKLTELEAAEEGDKLCRICNTTFPSPQVLEGHLCSSKIFKNIQVMDESESDGVLATKEEHHAKKPTMQGEETTVLGGNAVEAIRGYHCKIFIKTFSTGQVFGDHKISNWTSTAEAQSSAQATSSPVGNAQNCSKILTFDLNQLPAMDGQDGVQSDLFIPANIGIAFYWAKIKVMSSCLFCVFFLNVKHDVSRKLAVKERSEKALWGFHWGYKCYPFLCHAVDPLPHGHAPQPRVVPQAPQTDIPCVPEPGASSTSTEEPRHAVEVCDDIAERLERHLSLGVVTLGSSTHEVAENKNVVCLEWWRRSTSTEAMVSSVDGGYGVWRPQKKLQGLE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00934 574 Gene3D Classic Zinc Finger 4 117 - -
Gma16g00934 574 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Gma16g00934 574 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Gma16g00934 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Gma16g00934 574 MobiDBLite consensus disorder prediction 164 186 - -
Gma16g00934 574 Pfam C2H2-type zinc finger 94 116 - -
Gma16g00934 574 Pfam C2H2-type zinc finger 38 59 - -
Gma16g00934 574 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 305 IPR044653 GO:0003700
Gma16g00934 574 SUPERFAMILY beta-beta-alpha zinc fingers 36 114 IPR036236 -
Gma16g00934 574 SMART c2h2final6 92 114 IPR013087 -
Gma16g00934 574 SMART c2h2final6 37 59 IPR013087 -
Gma16g00934 574 MobiDBLite consensus disorder prediction 120 145 - -
Gma16g00934 574 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 325 388 IPR044653 GO:0003700
Gma16g00934 574 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 2 305 - -
Gma16g00934 574 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 325 388 - -
Gma16g00934 574 Pfam Zinc-finger of C2H2 type 257 278 - -
Gma16g00934 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00934 Gma-Chr16 21950072 21958786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00934 35 128 C2H2 Transcription Factor Family AT2G26940 39.450 1.69e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma16g00934 zf-C2H2_6 4.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00934 - - gmx:102667003 791.186