Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00930 ATGAGCTTCGGCGGCCATGCCGCCAACGACTGTTGCGAGTTCTTGGCGGCCAGAGAGGATGACACGCTGGAGACCGTCATCTGCGTTGCCTGCAACTACCATCGGAATTTCCACTGCAAGGAGATCGACGACGAGATTACCTCCATCCACCACCGA 156 0.5769 MSFGGHAANDCCEFLAAREDDTLETVICVACNYHRNFHCKEIDDEITSIHHR 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00930 52 PANTHER MINI ZINC FINGER PROTEIN 2 2 43 - -
Gma16g00930 52 Pfam ZF-HD protein dimerisation region 2 42 IPR006456 -
Gma16g00930 52 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 41 IPR006456 -
Gma16g00930 52 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00930 Gma-Chr16 21767920 21768075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00930 2 48 ZF-HD Transcription Factor Family AT1G14440 44.681 7.30e-11 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma16g00930 ZF-HD_dimer 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00930 - - gmx:100776421 86.2705