Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00924 ATGGCTGCTCCAAAAGTGAACGAAAAGTTGCTTGAAGACCTTGAAGTAATGGGATTTCCAAAGGCACGAGCAACCAGAGCACTTCATTATTCTGGCAATACCAGCTTAGAGGATGCTATAAATTGGATCATTGATCATGAGAATGACATTGATATTGATGAGATGCCATTGGTAGATGTAGACATTGATATAGAGTCCACTGAATCATTCCCTATCACAGAAGAAATGAGAATGAAAGCACAGAGTTTAAGGGTACAAGAGCGCAAAAGGAAAGAGGAGGAAGAGAAAAGATTGGAGAGAGAACGGGAGAAGGAGAGGATTCAAGCTGGTAAGAGACTCCTTGAGGCTAAGCGAATTGCGGAAGAAAATGAAAGAAAACGGAATCTAGCATTGAAAAAAGCAGAAAAAGAAGAAGAGAAAAGAGCTAGAGAAAAAGTTCTCAAGAAACTAGAGCAGGATAAGTTAAATAGAAGGTATAAACAAGGATTGCCTTTAGAAGGCCAAGCAGCTGTGAGATCTTCTGCTATTGAAATAGAACAAGAAAAGAAGTCAAAGTCTGTTTATAATACAACAGCAAAAGCTGAACAGTTAAGAGAATGTCTGAGGAATCTCAAGCGTAACCATCAGGGTGAGGATGCCAGAGTCAGAAGGGCCTTTCAAACAATTTTAGTCTATGTTGGAAATGTTGCCAAGAATCCCAAGGAGGACAAGTACAGGAAAATTCGACTGAATAACCCATTATTCCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAGCTGTGTGGTTTTGAGAGAACGGGTGACTTCTTGTATCTTCCTGATGAAAAGGTTGACATGGCACTGTTAAATTCAGCTGGTTTGGTCCTAAATTCTGCAATGACAAATCCTTTCTTTGGAGTTTTAAGTTCTACTCACAATTGA 933 0.3944 MAAPKVNEKLLEDLEVMGFPKARATRALHYSGNTSLEDAINWIIDHENDIDIDEMPLVDVDIDIESTESFPITEEMRMKAQSLRVQERKRKEEEEKRLEREREKERIQAGKRLLEAKRIAEENERKRNLALKKAEKEEEKRAREKVLKKLEQDKLNRRYKQGLPLEGQAAVRSSAIEIEQEKKSKSVYNTTAKAEQLRECLRNLKRNHQGEDARVRRAFQTILVYVGNVAKNPKEDKYRKIRLNNPLFQDRVGSLNGGVEFLELCGFERTGDFLYLPDEKVDMALLNSAGLVLNSAMTNPFFGVLSSTHN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00924 310 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Gma16g00924 310 Coils Coil 194 214 - -
Gma16g00924 310 CDD UBA_PUB_plant 6 53 - -
Gma16g00924 310 SUPERFAMILY PUG domain-like 194 301 IPR036339 -
Gma16g00924 310 Gene3D - 8 53 - -
Gma16g00924 310 SMART PGNneu 217 278 - -
Gma16g00924 310 PANTHER F13M7.16 PROTEIN 1 307 - -
Gma16g00924 310 Coils Coil 119 156 - -
Gma16g00924 310 Coils Coil 83 108 - -
Gma16g00924 310 SUPERFAMILY UBA-like 4 57 IPR009060 GO:0005515
Gma16g00924 310 Pfam UBA/TS-N domain 7 43 IPR015940 -
Gma16g00924 310 PANTHER PUB DOMAIN-CONTAINING PROTEIN-RELATED 1 307 - -
Gma16g00924 310 Pfam PUB domain 214 282 IPR018997 -
Gma16g00924 310 CDD PUB_UBA_plant 201 305 - -
Gma16g00924 310 Gene3D - 198 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00924 Gma-Chr16 21478912 21486577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00924 1 305 C2H2 Transcription Factor Family AT1G04850 60.390 4.46e-103 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00924 - K24348 gmx:100781260 541.962