Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00890 ATGGACTTTGTCGGCTCACGAATTGGACTCAATATGGGAGGACGAACTTACTTCTCGTCCTCTGAGGATGACTTCGTGAGCCGGCTCTACCGTCGGTCTAGGCCCGTCGAACCCGGTTCAACTATCTTGTCGAACTCGCCACGGTGTCAGGCCGAGGGATGCAATGCTGATCTGTCGCAAGCCAAGCACTATCACCACCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACTGTCATCGCCGCCGGCTTAACTCAACGATTATGCCAGTAA 276 0.5507 MDFVGSRIGLNMGGRTYFSSSEDDFVSRLYRRSRPVEPGSTILSNSPRCQAEGCNADLSQAKHYHHRHKVCEFHSKAATVIAAGLTQRLCQ 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00890 91 Pfam SBP domain 49 91 IPR004333 GO:0003677
Gma16g00890 91 ProSiteProfiles Zinc finger SBP-type profile. 46 91 IPR004333 GO:0003677
Gma16g00890 91 Gene3D - 44 91 IPR036893 GO:0003677|GO:0005634
Gma16g00890 91 SUPERFAMILY SBT domain 47 91 IPR036893 GO:0003677|GO:0005634
Gma16g00890 91 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 6 91 - -
Gma16g00890 91 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 91 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00890 Gma-Chr16 20265926 20266201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00890 1 91 SBP-box Gene Family AT1G02065 74.725 1.08e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma16g00890 SBP 8.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00890 - - gmx:100778566 182.956