Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00885 ATGGTTTCTGGATCTTATATTCTGGTGCTGAAAGAGACAAAGTTCGAGTATTCGGAGCCGGTTTTGTACTTGGATGTGGGGATTTGGCACCCTTTGGCTCCCATTTCTAGCCCCAGTTGCCCGTTGCCAGTTGCCAGGAACACAATCTCAATTTGTTTGTCGCACCCACTTGAATGCTTGCAAGGGAACCCAGTTCCGGCATTCCTGTCCAAGACTTTCGACCCCGTCGACGATCCGTCGCTGGATCCGATCATGTCCTGGTGCTACAGCGGTGTTAGCTACATGGTGTGGGATCCTACCCTGTTTGCAAGACACGTCTTGCCGATGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACCTATGTGGATTGCAAATTCCATCACAGCTTCATCTGCTCCTCTAATGACTTGAAATCTGGTGTGTCTAAACCAAAATTTGTTTTTCTGCTCCATTGA 471 0.4692 MVSGSYILVLKETKFEYSEPVLYLDVGIWHPLAPISSPSCPLPVARNTISICLSHPLECLQGNPVPAFLSKTFDPVDDPSLDPIMSWCYSGVSYMVWDPTLFARHVLPMNFKHNNFSSFVRQLNTYVDCKFHHSFICSSNDLKSGVSKPKFVFLLH 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00885 156 Gene3D - 61 152 IPR036388 -
Gma16g00885 156 PRINTS Heat shock factor (HSF) domain signature 68 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00885 156 PRINTS Heat shock factor (HSF) domain signature 106 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00885 156 PRINTS Heat shock factor (HSF) domain signature 119 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00885 156 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 58 130 - -
Gma16g00885 156 SMART hsfneu3 64 149 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00885 156 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 58 130 IPR027725 -
Gma16g00885 156 SUPERFAMILY "Winged helix" DNA-binding domain 66 134 IPR036390 -
Gma16g00885 156 Pfam HSF-type DNA-binding 68 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00885 Gma-Chr16 20156627 20157809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00885 53 126 HSF AT5G03720 71.622 6.26e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma16g00885 HSF_DNA-bind 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00885 K09419 - gmx:100788429 136.346