Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00879 ATGGAGAAACTGAAAGTGTCTGCTAAGAATGATCCTGCTGCCAGCAGTGATCAGGCAGACTCATTTCCAATATTCAAAATGCGAGACAGTCAGAATGTTGGACTGCAGAACAGTAGAAGAGTGGAAGATGATGCAAAAGCTGTAAGATTGGATGGAGGTTCTGTAATTGTTCCCTCTAATTCTGCAAACAGTAAGGAACCTATCAACAAGTGGATGGCATTTGCAAAGAAGCCTGGTTTCACAGTTGATGGCAACTCAGCAACAAAGGATAAAAGTACAAGCGAAGATAATTACTCGAGGAATCATCTAAACGAGAAGTCGTCTTCTATTGTAACCGAAGCAAACATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGGTGAACTCGAGGAATTTCAAAGCATTAGGGGGAGAGAATACAAGTGGCTCTTTTGATGGTGACAGAAGCAGAAACTTGTCAGATAGATTTGTTGAACCGACACGGACGTCAGGGGAGTCAAACTACGGATCTGAGTCATCATCAGGGGTGTTTCCAAGGGTGTCGCAAGAGTTGAAGGAAGCATTGGCGACGCTGCAACAGACATTTGTTGTCTCAGATGCAACCAAACCAGATTGCCCAATCATGTATGCCAGCAGTGGCTTTTTTACTATGACAGGCTATTCTTCAAAGGAGATTATTGGAAGGAACTGTCGATTTCTTCAGGGGCCTGAGACCGACAAGAATGAAGTGGCCAAAATTCGGGATGCAACTAGAAATGGAAGAAGTTATTGTGGCAGACTTTTAAACTACAAGAAAGATGGAACTCCATTCTGGAATCTTCTCACTATCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGAATGCAGGTTGAAGTGAGCAAGTATACAGAAGGCGTGAATGAAAAGGCATTACGACCAAATGGATTACCTAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGAAAGCTTTGGGTTCTATCACTGAGGTTGTCCAAACCGTTAAAGACCCAAAATCAATTATTAATGATAGGAATGGTGATACTGCTGCCAAGCCTGAAGAACAAGAGAAGTTCAATTTTGATTTTGTTTTGCCAAAGTCTGCTGATATTGGGAATACAAACACACCTGGTAGACAAGCTTCTCCACTTTACATCCAACGCATGAGTTCTAGTCAGGATAAGAGCAGGACATCACAATCAGGACGGATTTCTTTCAAGGGTTTAAAAGGGAGATCTCTGAGTTCTGCAGAGGAGAAGTCCATAGTTGAACCTGAGGTTTTGATGACCAAGGAAATAGAGTGGTCTAACAATTTGGAGCATTCACTAAGAGAGAGGGACATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGAGGATAGAAAAGAACTTTGTGATTTCTGATCCTAGACTTCCTGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACGGAATATACACGAGAAGAAATTTTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGAGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTGGAAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGGTGAAAGCCACAGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCGGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCCCAACCCGTCTTTCCACGACCTCACAAGAAGGAAAATCCTTCTTGGATAGCGATACAAAAGGTAGCTGCAAGAGGTGAAAAAATTGGCCTGCAACATTTTGTGCCCATAAGGCCGTTGGGTTGTGGAGACACTGGCAGTGTTCATTTGGTGGAACTCAAAGGTACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTGATGCTAAATCGTAATAAGGTTCACCGCTCATGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACTCCTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTGTTTGCATTGCTTGACAAGCAACCAATGAAGATTTTCAAAGAAGAATCAGCGAGATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAGCTGATTTTGATCTATCATATATGACATCTTGTAAACCACAGGTTGTGAAGCAAGCGATACCTGGTAAAAGAAGATCACGAAGTGAACCACCACCAACATTTGTTGCAGAGCCAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCAGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTCTATGGTCGTACACCATTCAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAGTTGATTAATGCACTACTCCAAAGAGACCCAACAAGTCGTATAGGTTCAACCACTGGTGCCAATGAAATCAAGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGGCAAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAGCTCTATTGATATGGATATTTTTTGA 2973 0.4161 MEKLKVSAKNDPAASSDQADSFPIFKMRDSQNVGLQNSRRVEDDAKAVRLDGGSVIVPSNSANSKEPINKWMAFAKKPGFTVDGNSATKDKSTSEDNYSRNHLNEKSSSIVTEANIAERTAEWGLVVNSRNFKALGGENTSGSFDGDRSRNLSDRFVEPTRTSGESNYGSESSSGVFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPETDKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTITPIKDDHGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKDPKSIINDRNGDTAAKPEEQEKFNFDFVLPKSADIGNTNTPGRQASPLYIQRMSSSQDKSRTSQSGRISFKGLKGRSLSSAEEKSIVEPEVLMTKEIEWSNNLEHSLRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKENPSWIAIQKVAARGEKIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIISLLDHPFLPTLYTSFQTPTHVCLITDFFPGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLADFDLSYMTSCKPQVVKQAIPGKRRSRSEPPPTFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSGIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPTSRIGSTTGANEIKQHPFFRGINWPLIRNMTPPPLDVPLKLIGNDPVAKDIKWEDDGVLVSSIDMDIF 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00879 990 ProSiteProfiles PAS repeat profile. 454 527 IPR000014 -
Gma16g00879 990 Pfam PAS domain 477 569 IPR000014 -
Gma16g00879 990 Pfam PAS domain 201 297 IPR000014 -
Gma16g00879 990 ProSiteProfiles PAS repeat profile. 180 253 IPR000014 -
Gma16g00879 990 ProSiteProfiles PAC domain profile. 254 308 IPR000700 -
Gma16g00879 990 MobiDBLite consensus disorder prediction 1 25 - -
Gma16g00879 990 CDD PAS 207 296 IPR000014 -
Gma16g00879 990 Gene3D PAS domain 194 353 - -
Gma16g00879 990 ProSiteProfiles Protein kinase domain profile. 655 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00879 990 SMART pas_2 456 525 IPR000014 -
Gma16g00879 990 SMART pas_2 182 251 IPR000014 -
Gma16g00879 990 CDD STKc_phototropin_like 653 964 - -
Gma16g00879 990 ProSitePatterns Protein kinases ATP-binding region signature. 661 684 IPR017441 GO:0005524
Gma16g00879 990 MobiDBLite consensus disorder prediction 137 175 - -
Gma16g00879 990 Gene3D Transferase(Phosphotransferase) domain 1 739 956 - -
Gma16g00879 990 Gene3D Phosphorylase Kinase; domain 1 654 738 - -
Gma16g00879 990 Gene3D PAS domain 444 607 - -
Gma16g00879 990 SUPERFAMILY Protein kinase-like (PK-like) 636 967 IPR011009 -
Gma16g00879 990 ProSiteProfiles PAC domain profile. 528 582 IPR000700 -
Gma16g00879 990 Pfam Protein kinase domain 658 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00879 990 MobiDBLite consensus disorder prediction 82 101 - -
Gma16g00879 990 TIGRFAM sensory_box: PAS domain S-box protein 480 571 IPR000014 -
Gma16g00879 990 TIGRFAM sensory_box: PAS domain S-box protein 206 297 IPR000014 -
Gma16g00879 990 PANTHER FLIPPASE KINASE 1-RELATED 148 989 - -
Gma16g00879 990 CDD PAS 477 569 IPR000014 -
Gma16g00879 990 MobiDBLite consensus disorder prediction 374 408 - -
Gma16g00879 990 SUPERFAMILY PYP-like sensor domain (PAS domain) 473 569 IPR035965 -
Gma16g00879 990 MobiDBLite consensus disorder prediction 156 175 - -
Gma16g00879 990 SUPERFAMILY PYP-like sensor domain (PAS domain) 201 293 IPR035965 -
Gma16g00879 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Gma16g00879 990 PANTHER BNAA02G07840D PROTEIN 148 989 - -
Gma16g00879 990 SMART serkin_6 655 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00879 990 SMART pac_2 257 299 IPR001610 -
Gma16g00879 990 SMART pac_2 531 573 IPR001610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00879 Gma-Chr16 19962063 19988110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00879 67 989 AGC Kinase Gene Family AT5G58140 72.038 0.0 1318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gma16g00879 Pkinase 5.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00879 K20715 - gmx:100804783 1970.67