Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00876 ATGGGAGCTGCAGGGAAATCTGATCCCAACAAGGTGAATAAGTATTTCAAACTAGAGGAGGAAGAAGTAGACGAAGATCTGGATTACAGAGCACTTGAAAGTGGATATGTCGCAGTGACTCCGCTGTCTATTTCTCCTCATATTGAGACTGTTATTCAAATGGTAGCTTTCTGCTGTGTTTCCTGCGTCCGTGCAGGTTCATCTGGATGCACCAAAGAAGTAGCCGTGAATCGAATGGTGCCCCGAAATCGGCACCTCGTGTTGCCTTCGAGGGTCTTCCAAGCTCCCTCTAGGCACTCTATCTCTACTCGATCACGGATTTGCTGCACCGCCATCACGATCTACAAGAAGGAAAAGAAAGGGGAGCTCGCCTGCTTAGGTACATCACAGGTTCTCACTGACCGACTATGCCCGGGTTGGGTCGGGATTGGTCAAGCTTGGTTTTGGGCAATAGCACCCCACCTGACGTCCCCAAGGTCTCCTGACCCCCGCGACATATCTCCAGATTTCCATCAGCAATTTCAGCATATAAACATCACAAACATCATCACAAAAACCCTAAAACAGAATGGGCACGAGGTAGCTGGTGTAGTGACAGAGGTGGGAAGCAAAGTAGAAAAGTTCAAAGTTGGAGACAAGGTTGGTGTGGGATGCTTGGTTGATTCCTGTCGCACCTACCAGAACTATGATGACAATCTTGAGAATTATTGTCCTCAATATACGCTCACATATGGTGCCAAATATAGAGATGGCACCATCACATACGGAGGCTACTCTAACTCAATGGTTGCAGATGAGCATTTTGTGATTCGCATTCCTGATAGCTTAGCACTTGATGCTACTGCACCTCTTATTTGTGCTGGCATCACTGTGTATAGCCCTCTCAGATATTATGGACTTGACAAGCCTGACCTACATGTTGGTGTGGTTGGTCTCAGTGGACTAGGTCACATGGCTGTCAAGTTTGCCAAAGCTTTTGGAGCTAAGGGTACAATGGGTGCTTTGGATGGTATTATTGACACAGTTTCTGCGGTTCATCCTCTCTTACCTCTCATTGGTTTGCTCAAGTCTCATGGAAAGATTGTAATGGTGGATGCACCAGAGAGGCCTCTAGAACTACCAGTCTTTCCTTTACTTGCTGGTAAGCATATAGTTGCTGGCAGTCTGATTGGAGGGTTAAAGGAGACACAAGAAATGATTGATTTTGCAGCGAAACACAATGTCAAACCTGACATTGAAGTCATTCCTATGGACTATGTCAACACAGCAATGGAACGACTCCTTAAAGAAGATGTTAAATATCGATTTGTTATTGACATTGGAAACACACTGAAAGGGCAGGAGGTTAACATCAACATTGGTATAGAGAATGGAGAGTATAGTATAGTAGGAGGAGTTGCTGTTAAGGATCCATCTGCTCCCCATGGAGTTCGACTTTTGATCGAGGACTATCCTTATGCTTCTGATGGGCTAGAGATATGGGATGCTATCAAGTCTTGGGTGGAAGAATATGTCTCATTCTACTACAAGTCAGCTGAGGAACTTCAAAAAGACCCCGAACTCCAAGCTTGGTGGAAAGAACTTGTAGAGGTGGGTCATGGGGATTTGAAGGATAAGCCATGGTGGCAAAAGATGCAAACTCGTGAAGAGTTGGTTGAAGCTTCCGCTACCCTCATATGGATTGCTTCAGCTCTTCATGCTACTATTAACTTTGGACAGTATCCATATGGAGGTTTATTCCTGAATAGGCCAACTATTAGCAGGAGATTCATGCCTGCGAAAGGGTCTCCTGAATATGATGTGTTGGCTAAGAACCCTGAGAAGGAGTTTTTGAAGACTATTACTGGCAAGAAAGAGACCCTCATTGACCTTACAGTTATAGAAATTTTATCAAGGCACACATCTGATGAGTTCTACCTTGGGCAGAGAGATGGTGGTGACTACTGGACTTCTGATGCCGGGCCATTAGAGGCCTTTAAGAGGTTTGGAAAGAATCTTGAAGAGATTGAAAAGAAGCTTATAGAGAAGAACAATGATGAGACATTGAGAAACCGCTATGGGCCGACTAAAATGCCTTACACTTTGCTCTATCCTTCTAGTGAGGAGGGATTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA 2148 0.4474 MGAAGKSDPNKVNKYFKLEEEEVDEDLDYRALESGYVAVTPLSISPHIETVIQMVAFCCVSCVRAGSSGCTKEVAVNRMVPRNRHLVLPSRVFQAPSRHSISTRSRICCTAITIYKKEKKGELACLGTSQVLTDRLCPGWVGIGQAWFWAIAPHLTSPRSPDPRDISPDFHQQFQHINITNIITKTLKQNGHEVAGVVTEVGSKVEKFKVGDKVGVGCLVDSCRTYQNYDDNLENYCPQYTLTYGAKYRDGTITYGGYSNSMVADEHFVIRIPDSLALDATAPLICAGITVYSPLRYYGLDKPDLHVGVVGLSGLGHMAVKFAKAFGAKGTMGALDGIIDTVSAVHPLLPLIGLLKSHGKIVMVDAPERPLELPVFPLLAGKHIVAGSLIGGLKETQEMIDFAAKHNVKPDIEVIPMDYVNTAMERLLKEDVKYRFVIDIGNTLKGQEVNINIGIENGEYSIVGGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVEEYVSFYYKSAEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASATLIWIASALHATINFGQYPYGGLFLNRPTISRRFMPAKGSPEYDVLAKNPEKEFLKTITGKKETLIDLTVIEILSRHTSDEFYLGQRDGGDYWTSDAGPLEAFKRFGKNLEEIEKKLIEKNNDETLRNRYGPTKMPYTLLYPSSEEGLTFRGIPNSISI 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00876 715 PANTHER LIPOXYGENASE 464 715 IPR000907 GO:0016702|GO:0046872
Gma16g00876 715 Gene3D - 442 714 - -
Gma16g00876 715 SUPERFAMILY GroES-like 191 303 IPR011032 -
Gma16g00876 715 Gene3D - 332 389 - -
Gma16g00876 715 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 464 715 - -
Gma16g00876 715 CDD CAD1 191 439 - -
Gma16g00876 715 SUPERFAMILY Lipoxigenase 465 715 IPR036226 -
Gma16g00876 715 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 191 205 IPR002328 GO:0008270|GO:0016491
Gma16g00876 715 Gene3D - 294 331 - -
Gma16g00876 715 Gene3D - 169 293 - -
Gma16g00876 715 Pfam Lipoxygenase 464 698 IPR013819 GO:0016702|GO:0046872
Gma16g00876 715 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 278 409 IPR036291 -
Gma16g00876 715 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 465 715 IPR013819 GO:0016702|GO:0046872
Gma16g00876 715 Pfam Alcohol dehydrogenase GroES-like domain 190 271 IPR013154 -
Gma16g00876 715 Gene3D - 390 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00876 Gma-Chr16 19566031 19576265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00876 465 715 Acyl Lipid Metabolism Gene Families AT1G55020 61.753 7.38e-105 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00876 K15718 - gmx:100101853 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01865 09 44260433 44267228 Gma16g00876 16 19566031 19576265 PCT
Gma16g00876 16 19566031 19576265 Gma09g01865 09 44260433 44267228 PCT