Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00836 ATGGGTAGGCCACCTTGCTGTAACGAGAGTGGTGTTAAGAAAGGGCCATGGACACCGGAAGAAGATGAAAAGCTAATGGATTATATTAGCAAACATGGAAGGGGAACGTGGAGAACCCTTCCAAAGCATGCAGGTCTAAATAGGTGCGGGAAAAGCTGCAGGTTAAGGTGGGAAAACTATCTAAGACCAGATATTAAGAGAGGGAAATTCACTGAAGAAGAGGAGCAATTGATCATCAACCTTCATTCAGTTATTGGAAACAAGTGGGCAAAGATTGCTACCCATCTTCCAGGGAGAACCGATAATGAGATCAAGAATTATTGGAACACCAACTTAAGAAAAAAGCTTCTCCAGATGGGTATTGACCCAGAAACTCACAAGCCTAGAACTGACTTCAATCACCTCTTGAATCTTTCCCAGTTGCTTGGCTTGTCAAATTTGGGCACATCAACGAGTCCCTGGACAAATCCTCTGGGTTTACAAGCAGATGTCACTCAAATAGCCAAACTACAACTGCTACAAAACATGTTACAACTATTTAACGGCACTTCATTGGTTAACATAGGTAACCCTTACCTCTTAGGAAATCAAATTCTCAACCCACTTGATACATTTCTCAATGGGACAAACATCCTACCAGACAAAGATTCAATTTTGAGAGGTCTAGAATATGCAAACCCTGTAGGTAACAATTCTGGCCTGTTTCTGTCTCAAACATACAGTGACTCAAGTGTCTTCAAATCAC 745 0.4161 MGRPPCCNESGVKKGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRCGKSCRLRWENYLRPDIKRGKFTEEEEQLIINLHSVIGNKWAKIATHLPGRTDNEIKNYWNTNLRKKLLQMGIDPETHKPRTDFNHLLNLSQLLGLSNLGTSTSPWTNPLGLQADVTQIAKLQLLQNMLQLFNGTSLVNIGNPYLLGNQILNPLDTFLNGTNILPDKDSILRGLEYANPVGNNSGLFLSQTYSDSSVFKS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00836 248 CDD SANT 69 112 IPR001005 -
Gma16g00836 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma16g00836 248 CDD SANT 16 61 IPR001005 -
Gma16g00836 248 Gene3D - 12 67 - -
Gma16g00836 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma16g00836 248 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma16g00836 248 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma16g00836 248 SMART sant 13 63 IPR001005 -
Gma16g00836 248 SMART sant 66 114 IPR001005 -
Gma16g00836 248 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Gma16g00836 248 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma16g00836 248 Gene3D - 68 134 - -
Gma16g00836 248 PANTHER MYB TRANSCRIPTION FACTOR 1 221 - -
Gma16g00836 248 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma16g00836 248 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00836 Gma-Chr16 14930388 14931286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00836 1 200 MYB Transcription Factor Family AT5G16770 63.184 2.16e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma16g00836 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00836 K09422 - gmx:100803906 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00147 01 1620919 1623411 Gma16g00836 16 14930388 14931286 PCT
Gma09g01913 09 44747470 44749764 Gma16g00836 16 14930388 14931286 PCT
Gma16g00836 16 14930388 14931286 Gma01g00147 01 1620919 1623411 PCT
Gma16g00836 16 14930388 14931286 Gma09g01913 09 44747470 44749764 PCT