Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00834 ATGAGCTTTCAGGACATCGAGGCCGGGCGCCCCTTCGGTTCGAGGCGCGGGTTGATGAATGGGAAGCAAGACCCCACGCAAGCGGTGGCTGCCGGCATATTCCAGATCAACACTGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAGCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAGATCTTCAAAGATCTTGCTGTACTTGTCCATGAGCAAGGAGCCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4647 MSFQDIEAGRPFGSRRGLMNGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTLDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDVGSDKSPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLSKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00834 273 SMART tSNARE_6 175 242 IPR000727 -
Gma16g00834 273 CDD SNARE_Qa 200 241 - -
Gma16g00834 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Gma16g00834 273 CDD SynN 19 148 IPR006011 GO:0016020
Gma16g00834 273 Gene3D - 174 273 - -
Gma16g00834 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Gma16g00834 273 SUPERFAMILY t-snare proteins 19 235 IPR010989 GO:0016020|GO:0016192
Gma16g00834 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Gma16g00834 273 Gene3D - 20 133 - -
Gma16g00834 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma16g00834 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Gma16g00834 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Gma16g00834 273 Pfam SNARE domain 217 268 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00834 Gma-Chr16 14807314 14810601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00834 1 261 SNARE and Associated Proteins AT5G46860 78.161 5.68e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00834 - K08488 gsj:114390582 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00139 01 1546798 1552068 Gma16g00834 16 14807314 14810601 PCT
Gma09g01920 09 44817849 44822437 Gma16g00834 16 14807314 14810601 PCT
Gma16g00834 16 14807314 14810601 Gma01g00139 01 1546798 1552068 PCT
Gma16g00834 16 14807314 14810601 Gma09g01920 09 44817849 44822437 PCT