Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00833 ATGGACGGAAGAGCGAGCAGCAGCGTGGGCGGAGAAGCATCGCCAGCTCCAGCACCGGTGCCGATAACGAATGCGAACGCGCCGCCGCCTTTCTTGAGCAAGACATACGAGATGGTAGAGGACCCTTCGACGGACTCGATAGTGTCGTGGAGTCCAACGAACAACAGTTTCGTGGTTTGGAACCCTCCCGAGTTCGCCAGAGATCTCTTGCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAATTAAACACCTACGGATTTAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTGAGGGGTCAAAAGCACTTGCTTAAGACTATAACTCGGCGGAAACCTGCCCATGGTCATAATCAACAGGCACAGCAAGCACATGGACAGAGTTCATCTGTTGGGGCTTGTGTTGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGGCTACTGATAACCAGCTGCAGAGTATGGTTCAGCGCCTTCAAGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGTCCTGGTTTTTTAGCTCAATTTGTACAACAGCAAAATGAGAGTAGTAGACGCATAACGGAGGCAAATAAAAAACGCCGGCTTAAGCAGGAGGGTATTGGTGAAATGGAACATACTGCTGCTTCTGATGGCCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGCTGAGGCAAATGATGAAATTGGATACTTCTCGACTAGAATCTTTTAGTAATAACGCTGATAATTACTTGATTGGTGATCATTCATCATCATCCGGTGCAACGGACAGGGGAAACTCTTTGAGCCGGACTTCTGGAGTAACACTTCAAGTGGTCCCTCTGACTACAATCCAGTCTTCTCACATTCCATCTGCAACAGGGATAGGGGATGACCCTTCAACAGGAAAATCTGAGATTCTATCTACTCCTCAAGTTGTAGCCTGTGATGAAGTTACGAAAGCTCAGTACTCTAATGTAAATGTTTCGGTTGGAGAATCTAATGCACCTGCTATCCCTGTTACTCAAACAGATGAAATCATGCGGGACCTCTCTACAATACCAGACATAGTGGCAGGAAATATTCTTGATATTCCTCAAGAAAATTATATGGCACCTGAGACAGGCGGTGAAGGATATATGGATCCTACTTCATTTGGAGTGAATGTGTCATTGCCCATTGATTTTGATAGTATTTCACCTGAAGCAGACATTGATGATTTGTTGAACAATCCTCACTTTTGGGATGATATTTTGCGAACTCCAGTGTCAGAGGAGATTGATACGAATGATGCTGAAGTATTCAAGGAGAATGAGGTGCAGCCAATGGAAAATGGATTGGACAAATCACAAAATATGGACCAACTTACTGAGCAGATGGGCCTACTTTCTTCTGATGCCAAAAGAATTTGA 1533 0.4475 MDGRASSSVGGEASPAPAPVPITNANAPPPFLSKTYEMVEDPSTDSIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTITRRKPAHGHNQQAQQAHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQATDNQLQSMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESSRRITEANKKRRLKQEGIGEMEHTAASDGQIVKYQPLINEAAKAMLRQMMKLDTSRLESFSNNADNYLIGDHSSSSGATDRGNSLSRTSGVTLQVVPLTTIQSSHIPSATGIGDDPSTGKSEILSTPQVVACDEVTKAQYSNVNVSVGESNAPAIPVTQTDEIMRDLSTIPDIVAGNILDIPQENYMAPETGGEGYMDPTSFGVNVSLPIDFDSISPEADIDDLLNNPHFWDDILRTPVSEEIDTNDAEVFKENEVQPMENGLDKSQNMDQLTEQMGLLSSDAKRI 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00833 510 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00833 510 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00833 510 MobiDBLite consensus disorder prediction 1 25 - -
Gma16g00833 510 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 7 492 - -
Gma16g00833 510 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00833 510 Coils Coil 148 175 - -
Gma16g00833 510 SUPERFAMILY "Winged helix" DNA-binding domain 26 120 IPR036390 -
Gma16g00833 510 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 492 IPR027725 -
Gma16g00833 510 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00833 510 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00833 510 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma16g00833 510 Gene3D - 23 121 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00833 Gma-Chr16 14780502 14785356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00833 8 504 HSF AT1G32330 52.268 6.24e-164 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma16g00833 HSF_DNA-bind 3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00833 K09419 - gmx:732544 997.653