Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00827 ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAGGTAACTTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGTGACGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACCGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTATGCCTATGCAGAGAGACAACTTGTTGCAAATGATTCCGAGTCACAGGGAAATTGGACCATTGAGTATACTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCATAGGCACTATATGGGAGAAGATTTAGGTTCAATGAGCCTCAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAGCAAATTCGTACCCGCAGAAACCAACTCATGTACGAGTCCATTTCGGAGCTTCAAAAGAAGGAGAAAGTGATACAGGAGCAGAATAACATGCTTGCAAAGAAGATCAAGGAGAAAGAAAAGGTTGCAGCGCAGCAAGCACAATGGGAGCATCCAAACCACGGAGTTAATGCATCTTTCTTGCTACCGCAGCCACTTTTGAACATGGGGTGA 621 0.4541 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKVAAQQAQWEHPNHGVNASFLLPQPLLNMG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00827 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma16g00827 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma16g00827 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma16g00827 206 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Gma16g00827 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 - -
Gma16g00827 206 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gma16g00827 206 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma16g00827 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma16g00827 206 Coils Coil 151 181 - -
Gma16g00827 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma16g00827 206 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma16g00827 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma16g00827 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma16g00827 206 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 196 - -
Gma16g00827 206 Coils Coil 122 145 - -
Gma16g00827 206 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00827 Gma-Chr16 14411327 14416745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00827 1 201 MADS-box Gene Family AT1G26310 70.098 1.48e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma16g00827 K-box 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00827 K09264 - gmx:100810129 389.037