Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00823 ATGAGTAGTGTGTGGTGTGGTCCAAAAATGTACGAAGAAAGTAGTTGCTATGATCCCGATGCAATGATGGCAGAGGGAGCAGAAGACTGCTTCCCCCAAATGGTTTCAGAATCAGAGGCAGTTATGTCTGCTACACCCACACAGACCCACACCCACAACACCTTTGCCTACTCCTATTCCTGCGGAGAAGATGCTGCAAATGCAAATGGCCCAATAGCGATGGAACACCCCCAACAAAATCCATACAATTATAGCAACACCCAATTTGTGGAAGAGCTTTATTCGAATCAGCAATTTACTTATCACACACCAACACCAGATCTCCTTGACCTTCTCCACTTGCCAAACCCTATTCCAGGAGATAATAGGACAAACGTCTCCTCTGTGTCCTATGACCCTTACTTGCATCTCAACCTGCAACAACAACAACAACCTACCCTCCGAGAGTTGCTTCCTCACATGCCGGCTCTCAGAAATGATTTCCCCTTCGGCGGTGCCGCTGGAGGGGACGACATACAAGACTTCGGAAATGGATTGGTGGACTTCACTCAACAAGAAGTTGGGAAAAGGAGAGGTGGAAAGAGGACGAAGCAGTTCACCAGCACCACCACTGAGAGACAAAGGAGAGTGGATTTGAGTAGTAAATTTGATGCTTTGAAAGAACTCATCCCAAACCCCTCCAAGAGTGATAGAGCATCTGTGGTGGGAGATGCAATTAACTACATCAGAGAGCTTAAGAGGACAGTGGAAGAACTCAAATTACTGGTGGAGAAGAAGAGGCTCGAGAAACAAAGGGTGATGATGAGGCACAAGGTTGAAACTGAAGGTGAATCCTCCAACCTGGACCCTGCAGAGTACAGTGAAAGCTTAAGAAGTTCTTGGATACAGAGAAAAACCAAAGACACCGAGGTTGATGTGCGCATTGTTGACAACGAGGTCACAATTAAGCTTGTTCAGAGGAAGAAGATCGATTGCTTGGTGCATGTGTCTCACCTTCTCGATCAACTTAACCTCGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTCTTCAATACCAAGATATGTGAAGGTTCCTCAATTTATGCGAGTGCCATAGCCAACAAGCTCATTCAGGTCATGGACACAAGTTTGGCGGCAGCGTCACTCGCTTAA 1170 0.4667 MSSVWCGPKMYEESSCYDPDAMMAEGAEDCFPQMVSESEAVMSATPTQTHTHNTFAYSYSCGEDAANANGPIAMEHPQQNPYNYSNTQFVEELYSNQQFTYHTPTPDLLDLLHLPNPIPGDNRTNVSSVSYDPYLHLNLQQQQQPTLRELLPHMPALRNDFPFGGAAGGDDIQDFGNGLVDFTQQEVGKRRGGKRTKQFTSTTTERQRRVDLSSKFDALKELIPNPSKSDRASVVGDAINYIRELKRTVEELKLLVEKKRLEKQRVMMRHKVETEGESSNLDPAEYSESLRSSWIQRKTKDTEVDVRIVDNEVTIKLVQRKKIDCLVHVSHLLDQLNLDLQHVAGGHIGDFCSYLFNTKICEGSSIYASAIANKLIQVMDTSLAAASLA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00823 389 Coils Coil 242 262 - -
Gma16g00823 389 SMART finulus 202 251 IPR011598 GO:0046983
Gma16g00823 389 PANTHER TRANSCRIPTION FACTOR BHLH91 13 386 IPR045895 GO:0006355|GO:0048658
Gma16g00823 389 Gene3D - 193 275 IPR036638 GO:0046983
Gma16g00823 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Gma16g00823 389 CDD bHLH_AtMYC1_like 203 260 IPR045896 -
Gma16g00823 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 269 IPR036638 GO:0046983
Gma16g00823 389 MobiDBLite consensus disorder prediction 187 206 - -
Gma16g00823 389 Pfam Helix-loop-helix DNA-binding domain 204 245 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00823 Gma-Chr16 14161764 14163240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00823 10 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 38.876 9.93e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma16g00823 HLH 4.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00823 - - gmx:100795938 734.947