Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00776 ATGGAAAACCAGTTCTTTCTGGCTTCTGGGGTGTCACAAACACAACAACACCCTCTTCACTTTGAACCTTCACCACCAAATCCTTCTTCAGTGCCCTCTTGGCAATCACTCTCACCCCCAAACATGGGAATTCAACTAACAGTTATGAATTGTGCCCCTGAGCAAACCCAAGATTGCTTTTACAACCCCAATTGGGACAAGTCAACGGCAGATCATGGCCTTCACCATTTTGATTCCTCAGCACTGAGTTCAATGGTTTCATCACCAGCAGCATCATCCAACCCCAACAACAAGTCCAATGAGAATTTCATCATCAGGGAATTGGTGGGGAAATTGGGACCTATTGGGAGCTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGTTGTGGCATCTTCTTGCATGAATAGTAATGGCAATAACAGCACCTACACTTCATGCTACAGCACCCCTTTGAGCTCCCCTCCAAAGGTGAACATTGTCCACAGTTTGGTGAATGAGAGGTTGGCAAATTTGGGAGGAGGGAAGTCAACAATGGCTTTGAATTCCAGTGTGGCTGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGATAGGAGTGTCCAATTGGGGGTGAACAATGCTGAATTGGCTCAAAGATCTGCACCAGCAATGGAACATGGTGGGAAGTTGCCTAGAGTCTCAAGTAGTCCATTGCTCAAAACACTTGGATCTCAAATGGGTGCCCAAGAGAACAAGAATTCAGCAATTCATCAGGAGCAGGAGAAAATGGAAGGGGCCAATTCTCAAGAGGAATCTACAATTTCTGAGCAAGCCCCAAATGGGGAAATTGGGGTGAAAACTTCACAGGATATGATGAATTCCAGGAAAAGAAAAGCTTCTTCGAAAGGCAAAGCCAAAGAAACTTCAAACTCTTTTAATCCTACCAAGGGTGTTGAAGGTAGTGAGGATTCAAATTCAAAGCGCAGCAAGCCAAATGAGGGCGACGGAAATGAAAATGGCCAAGTGAAGGTTGAGGAAGAGTCCAAAGCAGAGGAAGAGAAACAGAACAAAAGTAACTCAAAACCTCCCGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGCAAGGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGAGAATCTTATTTCAAAAGATGTATTCCAGTCAAACAATTCTTTGGCAACACTCCCAAATGCAGTATTCCCATTAGATTCCTCAGCACAAACCTTTTATGGGCACCAGCCTCAGCAAAACAACCCAGTTGCCCATAATAACATACCTAACAGATCGGTGACCCACTGCTCAGTGGACCCATTAGATACTTCTTTGTGCCAAAACCTTGCCATGCAGTTACCACCCCTAAATGTGTTTAATGATGGTGGCTCTCAGTTTCCATTAGCATTCTTAGAGGACGATCTCCACACCATTGTTCAGATGGGGTTTGGCCAAGCAGCTAACAGAAAAACACCAATACAATCCCCGAGTTTCAACGGTTCAAATAATGTACCACAGATGAAAGTTGAGCTCTGA 1770 0.4458 MENQFFLASGVSQTQQHPLHFEPSPPNPSSVPSWQSLSPPNMGIQLTVMNCAPEQTQDCFYNPNWDKSTADHGLHHFDSSALSSMVSSPAASSNPNNKSNENFIIRELVGKLGPIGSSDEIPQHSPHPLVVASSCMNSNGNNSTYTSCYSTPLSSPPKVNIVHSLVNERLANLGGGKSTMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSVQLGVNNAELAQRSAPAMEHGGKLPRVSSSPLLKTLGSQMGAQENKNSAIHQEQEKMEGANSQEESTISEQAPNGEIGVKTSQDMMNSRKRKASSKGKAKETSNSFNPTKGVEGSEDSNSKRSKPNEGDGNENGQVKVEEESKAEEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIENLISKDVFQSNNSLATLPNAVFPLDSSAQTFYGHQPQQNNPVAHNNIPNRSVTHCSVDPLDTSLCQNLAMQLPPLNVFNDGGSQFPLAFLEDDLHTIVQMGFGQAANRKTPIQSPSFNGSNNVPQMKVEL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00776 589 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 455 IPR036638 GO:0046983
Gma16g00776 589 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 386 436 IPR011598 GO:0046983
Gma16g00776 589 MobiDBLite consensus disorder prediction 1 20 - -
Gma16g00776 589 MobiDBLite consensus disorder prediction 329 377 - -
Gma16g00776 589 Gene3D - 383 459 IPR036638 GO:0046983
Gma16g00776 589 MobiDBLite consensus disorder prediction 1 38 - -
Gma16g00776 589 PANTHER BHLH TRANSCRIPTION FACTOR 2 582 - -
Gma16g00776 589 Coils Coil 433 453 - -
Gma16g00776 589 CDD bHLH_AtBPE_like 376 461 - -
Gma16g00776 589 MobiDBLite consensus disorder prediction 252 377 - -
Gma16g00776 589 Pfam Helix-loop-helix DNA-binding domain 390 437 IPR011598 GO:0046983
Gma16g00776 589 MobiDBLite consensus disorder prediction 313 328 - -
Gma16g00776 589 MobiDBLite consensus disorder prediction 567 589 - -
Gma16g00776 589 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 582 IPR024097 GO:0006355
Gma16g00776 589 MobiDBLite consensus disorder prediction 275 298 - -
Gma16g00776 589 SMART finulus 392 442 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00776 Gma-Chr16 11112404 11115976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00776 1 543 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.455 2.29e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma16g00776 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00776 - - gmx:100801233 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00793 03 28874000 28877738 Gma16g00776 16 11112404 11115976 GST
Gma18g01434 18 36745692 36748158 Gma16g00776 16 11112404 11115976 PCT
Gma08g03195 08 48702810 48705892 Gma16g00776 16 11112404 11115976 PCT
Gma16g00776 16 11112404 11115976 Gma18g01434 18 36745692 36748158 PCT
Gma16g00776 16 11112404 11115976 Gma08g03195 08 48702810 48705892 PCT