Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00772 ATGTCAtcttcttcattctcaacaaaaccccaatggatctacgatgtgttcatcaacttcaggggaggagacactcgcaggaacttcgtctcccacctctactacgccctctccaacgccggcgtcaacaccttcttcgacgaggagaatctgctcaagggcatgcagctggaggagctatcgcgcgccatcgagggctcgcagatcgccatcgttgtcttctccgagacctacaccgagtcttcgtggtgcctctccgagctcgagaagatcgtcgagtgccatgaaacctacggccagacgatcgtgcccatattctacgacgtcgacccgtcCGTCGTGCGCCACCCGACGGGGCACTTCGGTGACGCCCTGGAAGCGGCTGCGCAGAAGAAGTATTCCGCGAAGGATAGGGAGTATGGGTTTTCCAGGTGGAAAATCGCGCTCGCCAAAGCTGCGAATTTCTCTGGTTGGGATGTGAAGAATCACAGGAATAAAGCTAAACTAGTGaagaaaattgttgaagacattctcacaaagctagactatgcactcttgtctattaccgaatttcctattggattggaaccccgcgtgcaagaagtgattggagttatagaaaatcaatccaccaaggtctgtatcatagggatatggggaatgggtggatcgggtaaaactaccattgccaaagccatctacaatcaaattcatcgtagattcatggacaagagtttcattgaaaatattagagaagtttgtgagacagatggtagaggacatgttcatttacaagaacaacttctttcagatgttctaaaaacaaaggagaaggtacgtagcattgggatgggaacaactatgattgacaaaagactttctggaaaaaggacgttcattgtacttgatgacgtgaatgagtttggccaattaaaaaacctatgtggaaatcgtaaatggttcggtcaaggaagtgtaataatcattacaactagagatcgacgtctgcttgaccaacttaaagttgattatgtttatgatgtggataaaatggacgaaaacgagtcccttgagctttttagttggcatgcattcaatgaagcaaaaccaaaagaagacttcaatgagcttgcaagaaatgtagttgcttattgtggaggactaccactagctcttgaagtccttggttcttatttaaatgagaggagaaagaaagattgggagagtgtattatcaaaactagaaagaatacccaatgatcaagttcaagagaaattaagaataagctttgacggtttaagcgatcacatggaaaaggatatatttcttgatatatgttgtttctttattggtaaagacagagcctatattactgagatactaaaaggttgtgggctacatgctgatattggaataacagttctgatagatcgtagcctcttaaaagttgaaaagaacaacaaacttggaatgcatcaattgctacgggacatgggaagagagataatttgtgaaagttcaagaaaggaaccagggaagcggagtcgattgtggtttcatgaggatgtacttgatgtattgacaaataatactGGGACAGTGGCTATTGAGGGATTGGCTCTGAAATTGCATTTCGCCGGTAGAGATTGCTTCAACGCTTATGCTTTTGAGGAAATGAAGAGATTGAGACTGTTGCAACTTGATCATGTACAACTAACAGGAGATTATGGGTATCTTTCTAAGCAACTGAGATGGATCAGTTGGCAAGGGTTTCCTTCAAAATACATACCTAACAACTTTTATCTGGAAGGTGTGATTGCGATGGATTTAAAACACAGTAATCTGCGGCTATTCTGGAAAGAACCCCAGGTTTTGAAGTGGCtaaaaatcctcaatcttagtcactccaagtacttgaccgaaacccctaacttttcaaaactaccaaatcttgaaaagctcattctcaaagattgcccacgtttgtgcaaggtacacaagtccattggagatctctgcaatcttcatttgataaatttgaaggactgtaaaactctaggcaatctgccaaggggagtttataagttgaaatctgtaaaaactctcattctttcgggttgttcgaagattgacaaattagaagaagacatagtgcagatggaatccttgacaactctaattgctgaaaatactgctctgaaacaagtgcccttttcaatagtCAACTCAAAAAGCATTGGCTATATATCCCTATGTGGATATGAAGGATTTGCACGAAATGTTTTTCCTTCTATCATTCGGTCTTGGATGTCACCAACATTGAATCCCCTATCTTATATTAGTCCGTTTTGTAGCACATCGTCATATCTAGTTTCCCTGGATATGCAAAGTTATAATTCGGGTGACCTTGGGCCAATGCTTAGAAGCCTTTCAAATCTTCGAAGTATTTTGGTGCGATGTGACACAGACTCTCAAATATCTAAACAAGTAAGAACAATTCTGGACAACGTATATGGTGTAAGTTGTACAGAATTGGAAATAACATCACAAAGTTCAGAGCATTACTTGAGGTCTTATTTAATTGGAATTGGAAGTTATCAAGATGTCTTCAATACTCTCAGTGATAGCATATCCGAGGGATTGACAACCAGTGAGTCTTCTGATGTTTTTCTCCCTAGTGACAATGATCCTTATTGGTTTGCCCATATGGGTGAGGGACATTCAGTGTTTTTTACTGTGCCTGAGGATTGTCGTATGAAGGGAATGACTTTGTGTGTAGTTTATTTATCCACTCCTGAAAGCAAAGCAATTGAATATCTTATTAGTGTTTTAATGGTTAATTACACAAGGTGTACCATCCAGATATTCAAGCGAGACACAGTTATTTCCTTTAATGATGTAGATTGGCATGACATAATATCACATTCAGGACCCGGAGACAAGGTGGAGATTTATGTGATTTTTGGGCATGGGTTGGTGGTCAAGAAGACAGCTGTCTATCTAATGTGTGATGAATCAATTGACAAGGGAATGGACCCTTCTCCTGAGCCAAAGATAGAGCCAAAGAAAAATGCCTTTGTAAAATTCATAAAGAAAATTGTATCAAGTAAAAATGAAGAGCAGTAG 3126 0.1791 MSSSSFSTKPQWIYDVFINFRGGDTRRNFVSHLYYALSNAGVNTFFDEENLLKGMQLEELSRAIEGSQIAIVVFSETYTESSWCLSELEKIVECHETYGQTIVPIFYDVDPSVVRHPTGHFGDALEAAAQKKYSAKDREYGFSRWKIALAKAANFSGWDVKNHRNKAKLVKKIVEDILTKLDYALLSITEFPIGLEPRVQEVIGVIENQSTKVCIIGIWGMGGSGKTTIAKAIYNQIHRRFMDKSFIENIREVCETDGRGHVHLQEQLLSDVLKTKEKVRSIGMGTTMIDKRLSGKRTFIVLDDVNEFGQLKNLCGNRKWFGQGSVIIITTRDRRLLDQLKVDYVYDVDKMDENESLELFSWHAFNEAKPKEDFNELARNVVAYCGGLPLALEVLGSYLNERRKKDWESVLSKLERIPNDQVQEKLRISFDGLSDHMEKDIFLDICCFFIGKDRAYITEILKGCGLHADIGITVLIDRSLLKVEKNNKLGMHQLLRDMGREIICESSRKEPGKRSRLWFHEDVLDVLTNNTGTVAIEGLALKLHFAGRDCFNAYAFEEMKRLRLLQLDHVQLTGDYGYLSKQLRWISWQGFPSKYIPNNFYLEGVIAMDLKHSNLRLFWKEPQVLKWLKILNLSHSKYLTETPNFSKLPNLEKLILKDCPRLCKVHKSIGDLCNLHLINLKDCKTLGNLPRGVYKLKSVKTLILSGCSKIDKLEEDIVQMESLTTLIAENTALKQVPFSIVNSKSIGYISLCGYEGFARNVFPSIIRSWMSPTLNPLSYISPFCSTSSYLVSLDMQSYNSGDLGPMLRSLSNLRSILVRCDTDSQISKQVRTILDNVYGVSCTELEITSQSSEHYLRSYLIGIGSYQDVFNTLSDSISEGLTTSESSDVFLPSDNDPYWFAHMGEGHSVFFTVPEDCRMKGMTLCVVYLSTPESKAIEYLISVLMVNYTRCTIQIFKRDTVISFNDVDWHDIISHSGPGDKVEIYVIFGHGLVVKKTAVYLMCDESIDKGMDPSPEPKIEPKKNAFVKFIKKIVSSKNEEQ 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00772 1041 Pfam TIR domain 14 183 IPR000157 GO:0007165
Gma16g00772 1041 Gene3D - 350 434 IPR042197 -
Gma16g00772 1041 Gene3D - 8 187 IPR035897 -
Gma16g00772 1041 ProSiteProfiles TIR domain profile. 12 181 IPR000157 GO:0007165
Gma16g00772 1041 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 1003 - -
Gma16g00772 1041 SMART till_3 13 155 IPR000157 GO:0007165
Gma16g00772 1041 Gene3D Ribonuclease Inhibitor 550 856 IPR032675 -
Gma16g00772 1041 Gene3D - 188 345 IPR027417 -
Gma16g00772 1041 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Gma16g00772 1041 PRINTS Disease resistance protein signature 215 230 - -
Gma16g00772 1041 PRINTS Disease resistance protein signature 292 306 - -
Gma16g00772 1041 PRINTS Disease resistance protein signature 385 399 - -
Gma16g00772 1041 PRINTS Disease resistance protein signature 694 710 - -
Gma16g00772 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 445 IPR027417 -
Gma16g00772 1041 SUPERFAMILY L domain-like 491 817 - -
Gma16g00772 1041 Pfam NB-ARC domain 199 419 IPR002182 GO:0043531
Gma16g00772 1041 CDD AAA 193 333 - -
Gma16g00772 1041 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 1003 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00772 Gma-Chr16 10737281 10742371 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00772 14 742 WRKY Transcription Factor Family AT4G12020 30.933 5.81e-84 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00772 - - gmx:100815297 2086.23