Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00747 ATGGCTCGCCACCTCGACATCCCTGTCGTCATGCACACCGTTGCGAACCCTGACGTGTCCCAACACAAGCTCTTCATTCGCGGCCTCGACTGGGACACCACCACCGACGTCCTCCACTCCCTATTCTCCACCTACGAAGACCTCAAGGAGGTCGTCATCATCCTCGATAAGGCCACAAGCACAGGGAACCAGATCCACGCATCGCCACCATCAACCCTAAGAACACAGATTCGCCACAATCCCCATGTCATGCAATAG 258 0.562 MARHLDIPVVMHTVANPDVSQHKLFIRGLDWDTTTDVLHSLFSTYEDLKEVVIILDKATSTGNQIHASPPSTLRTQIRHNPHVMQ 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00747 85 MobiDBLite consensus disorder prediction 64 85 - -
Gma16g00747 85 MobiDBLite consensus disorder prediction 64 79 - -
Gma16g00747 85 Gene3D - 19 65 IPR012677 -
Gma16g00747 85 PANTHER UBP1-ASSOCIATED PROTEIN 2C 2 60 - -
Gma16g00747 85 SUPERFAMILY RNA-binding domain, RBD 14 60 IPR035979 GO:0003676
Gma16g00747 85 PANTHER GEO13361P1-RELATED 2 60 - -
Gma16g00747 85 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 60 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00747 Gma-Chr16 9923178 9923435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00747 15 62 C2H2 Transcription Factor Family AT2G19380 37.500 6.17e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00747 K12741 - gmx:100776220 85.8853