Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00654 ATGGAAAGTGCAAGAATCAGCCAATGGTTAAATCTTCTAGTTTGTGTACTGCTATTACTTAAGGCAGAAGGATCTTCAGTTCCATTGACTTTGGTCGAGAATGCCGAATCAAAAGGAGCTGTATGTTTGGATGGAAGTCCACCAGCTTACCACTTTGATAAGGGATTTGGAGAAGGGATTGACAACTGGATTGTTCACATTGAGGGAGGAGGATGGTGCAACAATGTCGAGAGTTGCCTTGAACGTAAGAACACTAGATTAGGTTCATCTAAGCAAATGAAGGATATTTACTTTTCGGCAATTTTAAGCAATGAGCAACAGTTTAATCCAGATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGTTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCCAACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAGAATTACTAGCAAAAGGAATGAAGAACGTTAAAAATGCTATTCTCTCTGGCTGTTCAGCGGGAGGATTGACTACTATATTACACTGTGATAGCTTTAAAGCTTTGTTGCCTTCTGGAGCTAATGTGAAATGTGTTCCAGATGCTGGTTATTTTGTCAATGTAGAGGATATTTCAGGAGCACATTCCATTCAAGAGTTCTACAGTGAAGTTGTTTCAATACATGGTTCAGCAAAGAATTTACCCACATCTTGCACTTCAAAACTCAACCCAGCACTGTGCTTCTTTCCACAATATGTGGCATCACATATCAGTACTCCAATCTTCGTTGTTAATTCAGCCTATGACAGGTGGCAGATTCGAAACATCTTTATACCTGGCTCCGCTGATCCCAGTAATAGTTGGCATAGCTGCAAGATTAATATAAGCAACTGCTCAACTGATCAACTAAGTAAAATTCAAGGCTTCAAGAGTGAATTCGAAAGGGCATTGAGTGAGGTAGGAGATTCTCCATCTAAAGGAATGTTTATTGACTCTTGCTATGCCCACTGCCAAACAGAATTACAGGAGACATGGTTAAAGAGTGACTCTCCACAGCTCGCCAATACAACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGCTCTTTCCACCATGTAGATTTATCAGGTGCCGATGCAAGTGTAGTTTTGCTTCGGTGTAGATCTGACCCATGTGGGGATACCAGGAAAAGAAAGGATTTTGATTTCTGGGTTTTGTTTTTTGGTGCATTGGGTCATTGGAAAAGTGGAGAGATTGTTGTTGGTGTCATGGGTTCCAATGGTAGCAAAGCCACTTCTTCGTATTTAAGTAGTTCTTCATCGTCTTCTTCGGGGAGTTTAAGGAAGGGTCGATCTAAGGGCCTTAAAGTTTTTCAATCTTGTTGTCTTGGAACAACTTCTGGTTCTCACGACAGTGATAATGAAGACCAGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGCTACATATGCTGATGGCAATGGCACAGACTCGGATGAGGTGAAAGCGGAGTCATTTAGAAAGGTTAAACCTGGGGCAATGACTTGTATGCCTTCTAACATAGGCCTTGATGGATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGGAAGCAGCTCTATCCATACTTCTTCAACTCATTCCTTGAACCCTACAAGTCATTGCCTTTCTCGGTTTAGTCTCATTCCTGGTAATGTAAGCTTCAGACTTAGCAGAACCACTAGTTTGGGGTCATCAAGTCCTCGTCCTGTTTCTTCTGCCAATCTCTCAATATTTGACAATGAAGATGAGCATAATCTCCATCCTGGATCTCCTGGATGTTTGATTAACAGAAGTGTAACACAACAACGTAGTAATTTGCTTCCTGCATCTTTTTTCAATCAAATACATGCACAATGTCATGAAGATGCTTCTAATAATTCAAGGTCAAATGTCCCGACATCAGGCATACTTGGAAACTTGCAGAGCAATTCCACAGATGGAGTATGTACAAGAGAAGGGCCAGATGTGAACTTACTTTCTCCAAGAAGTCAGACCGCGACAGAAAATGTTGACAATGACACTACACATATTGATCAACGAAATGGTGCTCGAGAACCAGTTGAACGGAATTTTCATTTTAGCCGAACTTTAAGTGTCGGAAGGCTTCGTGACAGAGTTCTCCGTCGATCAACATTATCTGACCTCACCTTTTTCCCTTTGCAACAAGAGACAGAGCTGAGAGATGCTAGCCTGCCTAGCCAGGATATGGACAGGCAAGCAGTGGAGGGAAATTCAAGAGTGTCACCATCTGATCATAGTACCATTAATTCTTCAACAAATAGATATCCTCCATCTAGTATGTCTAACTCCATGTTTAGCATCCAAGATTATGAGGGTGAGACTTCAGGATTGAGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCTCTTCAGCGATTGGGCAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCGTGCATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATCAATAATCGTAACACTAATTCAAATGATGACACTGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCCTATTTGAGGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCGCAATGTTATATATGCCTTGTTGAGTATGAGGATGGAGACAACATGCGAGTACTACCGTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTTTGTCGAAGGGACATATGCATATCCGACTCAACACCAACAGAGAACTCGAGTTGCTAG 3012 0.4177 MESARISQWLNLLVCVLLLLKAEGSSVPLTLVENAESKGAVCLDGSPPAYHFDKGFGEGIDNWIVHIEGGGWCNNVESCLERKNTRLGSSKQMKDIYFSAILSNEQQFNPDFYNWNRVKVRYCDGSSFTGDVEEVDPTTNLHFRGARIFSAVMEELLAKGMKNVKNAILSGCSAGGLTTILHCDSFKALLPSGANVKCVPDAGYFVNVEDISGAHSIQEFYSEVVSIHGSAKNLPTSCTSKLNPALCFFPQYVASHISTPIFVVNSAYDRWQIRNIFIPGSADPSNSWHSCKINISNCSTDQLSKIQGFKSEFERALSEVGDSPSKGMFIDSCYAHCQTELQETWLKSDSPQLANTTIAKAVGDWFYGRSSFHHVDLSGADASVVLLRCRSDPCGDTRKRKDFDFWVLFFGALGHWKSGEIVVGVMGSNGSKATSSYLSSSSSSSSGSLRKGRSKGLKVFQSCCLGTTSGSHDSDNEDQVCDQNKVNGSDATYADGNGTDSDEVKAESFRKVKPGAMTCMPSNIGLDGWGETSIPNTSSRTGSSSIHTSSTHSLNPTSHCLSRFSLIPGNVSFRLSRTTSLGSSSPRPVSSANLSIFDNEDEHNLHPGSPGCLINRSVTQQRSNLLPASFFNQIHAQCHEDASNNSRSNVPTSGILGNLQSNSTDGVCTREGPDVNLLSPRSQTATENVDNDTTHIDQRNGAREPVERNFHFSRTLSVGRLRDRVLRRSTLSDLTFFPLQQETELRDASLPSQDMDRQAVEGNSRVSPSDHSTINSSTNRYPPSSMSNSMFSIQDYEGETSGLREGRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRINNRNTNSNDDTGARASISRIVMLAEALFEVLDEIHHQSVVLSSRPSVSSIGSVPAPNDVVDSLPVKLYEKLHKHQEDAAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRRDICISDSTPTENSSC 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00654 1003 MobiDBLite consensus disorder prediction 642 704 - -
Gma16g00654 1003 Pfam Pectinacetylesterase 21 371 IPR004963 GO:0016787
Gma16g00654 1003 CDD RING-H2_PA-TM-RING 944 987 - -
Gma16g00654 1003 MobiDBLite consensus disorder prediction 529 552 - -
Gma16g00654 1003 MobiDBLite consensus disorder prediction 756 789 - -
Gma16g00654 1003 MobiDBLite consensus disorder prediction 642 669 - -
Gma16g00654 1003 ProSiteProfiles Zinc finger RING-type profile. 945 987 IPR001841 -
Gma16g00654 1003 SUPERFAMILY RING/U-box 923 994 - -
Gma16g00654 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 908 992 IPR013083 -
Gma16g00654 1003 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 426 1002 - -
Gma16g00654 1003 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 426 1002 - -
Gma16g00654 1003 MobiDBLite consensus disorder prediction 747 789 - -
Gma16g00654 1003 Pfam Ring finger domain 944 987 IPR001841 -
Gma16g00654 1003 MobiDBLite consensus disorder prediction 528 552 - -
Gma16g00654 1003 SMART ring_2 945 986 IPR001841 -
Gma16g00654 1003 MobiDBLite consensus disorder prediction 676 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00654 Gma-Chr16 7658149 7669028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00654 5 376 Carbohydrate Esterase AT4G19420 56.373 3.37e-171 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00654 - - gmx:100812272 1094.72