Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00651 ATGAGCTTTCAGGACATCGAGGCTGGGCGGCCCTTCAGTTCGAGGCGCGGGTTGATGAACGGGAAGCAAGACCCGACGCAAGCGGTGGCTGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAACAGCAAATTGGTGAAGTTAATGAGATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAGCCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACTGCACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4635 MSFQDIEAGRPFSSRRGLMNGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDVGSDKSPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00651 273 CDD SNARE_Qa 200 241 - -
Gma16g00651 273 Gene3D - 174 273 - -
Gma16g00651 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Gma16g00651 273 SMART tSNARE_6 175 242 IPR000727 -
Gma16g00651 273 Gene3D - 19 133 - -
Gma16g00651 273 MobiDBLite consensus disorder prediction 1 23 - -
Gma16g00651 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Gma16g00651 273 CDD SynN 19 148 IPR006011 GO:0016020
Gma16g00651 273 Pfam SNARE domain 217 268 IPR000727 -
Gma16g00651 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Gma16g00651 273 SUPERFAMILY t-snare proteins 19 235 IPR010989 GO:0016020|GO:0016192
Gma16g00651 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma16g00651 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Gma16g00651 273 SMART SynN_4 14 127 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00651 Gma-Chr16 7610412 7615776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00651 1 261 SNARE and Associated Proteins AT5G46860 78.927 7.93e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00651 - K08488 gmx:547656 440.269