Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00648 ATGGAGAAAACAAGGCCCTCAGACCAAGTTGTTCTGTTCTTGGACCAGCATAACCCTAAACCACCCTCTATAGAGTCCGAAAACCATCAAAATAAACCTAAACACCCCTTAAAGGTCAGAACTCTTAACCGTCTCAGCTTCTCAAAACCCAAATCCCGAATCCTAGAATACAACTATAATGTCCCCCGCAACAAAGTTGCAATCTCTGAAGAAATTAGTGACGTTATTCAACCCACCTATAAGCTCTCGTCCAACGATGACGACAAAGAGGACGACGAAGATGATTGCGAATGGGATGAGGACGAGACGGAGGAGGATGGTTCGGAGCATGGCCCAAAGTTGCACCAAAAGAGGAAGTGCAAAATCAAGTGGAGGCTCATGATGGAGTGGATTTTGTTCCTAAACATATTGACATGCTTGGTATGTTCTTTGACCATATCTTCCATAACCAACATGCACCTTTTGGGATTGGAGATTTGGAAGTGGTGTTTGATGGCAATGGTCACATTCAGTGGCCGTTTGGTTTCGGGGTGGCTGGTAGGTCTAACGGTGTTCATCATCGAGCGAAACTTCATGCTCCGAGAGAAGGTACTGTACTTCATCTACGGGCTCCGAAAGAGCATAAGAAACTGCATGTGGCTAGGCCTGGTGCTACTCTCCTACTGGAGCGTGGTGTTCGACGACGTGCAAAAGAAGAACCACAAGTTCCTCAACAAGGTCTTCCAAGCCCTAGTAGCAGTCTTAGTTGGGGCCACCATCTGGCTCCTGAAGATCGTGCTGGTGAAGATGCTGGCGTCCTCGTTTCACGTCACCACCTACTTCGACCGAATGAAGGAGAGCGTCTTCCATCACTACATCTTGGAGACCCTGTCGGATCCACCGATGATGGACGATGTCGCCGAACAGCAGCACCATCTCACCAGGTGGAACAACGCCAAGAACTTGAACAAGTCCAAGAAGTTTGGGTCAAGGAGGATTGATATGGAGAAGCTGAGGAAGCTCAGCATGGAGAGCACCGCTTCGGCGTGGAGCGTGAAGAGGCTTGTGAACTACGTTAGGTCTTCTGGGTTGTCCACTATTTCAAGGACTGTCGATGATTTTGGCAACGCCGAGTCTGAGATTAATAGTGAGTGGGAAGCTAGGAACTGTGCTCAGAGGATTTTCAAGAACGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCCCTCTTTGAAGGCGCTCTCGAAACGGGACATATCAGCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCTCTAGCACAATCATTGAATGATACCAAAACAGCAGTGCAGCAGCTTCACAAAATAGCAAGCGCAATCGTTAGTGTGATAATAATCATTGTGATGCTCTTGGTGATGGAGGTGGCTACGCTCAAGATAATATTATTTTGTATTACACAAACTGTTTTGATAGGTGTTGCTTTCCAAGGTACCTGCAAGACTGTATTGGAGGCCATCATCTTTGTCTTCGTCATGCACCCTTTTGATATTGGAGACCGCTGCGTCATTGATGGAGTTCATATGATTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCTAACGCAGTTTTACTCTCTAAGCCTATAAGCAATTTCTATAGGAGTCCAGAGATGTGTGATTCAATTGATTTCACCATTGATGTATCAACTTCTATGGAGACCATCCTTGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAACACAGCATGATAGCAAAAGGAATTGAGAATATGGACAAGCTAAAGTTGTGCTTATCTGTGCAACATACCATCAACCATCAGAACTACGGTGAACGAAACGTCAGGATAACAGAGCTTCTCTTGGAACTGAAGAAGATCTTTGAGATTCATGGTATTAAGTACCATCTTCTTCCTCAAGAGATCCAGATAACCCATATGAATATTGAACATGGCAAAGTTTTGTTTCAATCATGA 2082 0.4433 MEKTRPSDQVVLFLDQHNPKPPSIESENHQNKPKHPLKVRTLNRLSFSKPKSRILEYNYNVPRNKVAISEEISDVIQPTYKLSSNDDDKEDDEDDCEWDEDETEEDGSEHGPKLHQKRKCKIKWRLMMEWILFLNILTCLVCSLTISSITNMHLLGLEIWKWCLMAMVTFSGRLVSGWLVGLTVFIIERNFMLREKVLYFIYGLRKSIRNCMWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLVGATIWLLKIVLVKMLASSFHVTTYFDRMKESVFHHYILETLSDPPMMDDVAEQQHHLTRWNNAKNLNKSKKFGSRRIDMEKLRKLSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEINSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGHISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAIVSVIIIIVMLLVMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMCDSIDFTIDVSTSMETILALKKSIQMYIESKPKYWNPKHSMIAKGIENMDKLKLCLSVQHTINHQNYGERNVRITELLLELKKIFEIHGIKYHLLPQEIQITHMNIEHGKVLFQS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00648 693 SUPERFAMILY Sm-like ribonucleoproteins 514 572 IPR010920 -
Gma16g00648 693 MobiDBLite consensus disorder prediction 79 113 - -
Gma16g00648 693 Gene3D - 523 572 IPR023408 -
Gma16g00648 693 MobiDBLite consensus disorder prediction 87 106 - -
Gma16g00648 693 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 691 IPR016688 -
Gma16g00648 693 MobiDBLite consensus disorder prediction 1 38 - -
Gma16g00648 693 Pfam Mechanosensitive ion channel 464 669 IPR006685 GO:0016020|GO:0055085
Gma16g00648 693 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 691 - -
Gma16g00648 693 PIRSF Memb_At2g17000 7 691 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00648 Gma-Chr16 7564793 7578501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00648 6 683 Mechanosensitive Ion Channel Family AT5G12080 42.632 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00648 K22048 - gmx:100808521 1323.53