Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00636 ATGCTTCCACTCCAATTCGGCACCCACCCTCCACCATCGCTGTTTCTGAGCAGCTCCAACAGCAACGCTTGTTGCTCCTCCTCTCGCCTCCTCTACCACCACAACAGAAACAACAACAAGCAGCACCTTCTTCGCTCCAACGTCGGAACCCTCAGCCTTAGGGTTTTCGCAGTGTCTGGAAACTCCGCGTTCAAAATGAACCTCAGCGAGTACCTCGTCACTCTGGAGAAACCCCTCGGCATCCGATTCGCGCTAACTTCTGATGGCAGAATCATCGTCCACTCTCTCACCAAAGGGGGAAATGCGGAGAGGTCCAGGATAATTATGGTGGGCGACACATTGAAGAAAGCTGGCGATTCGTCTCAGAACACTCTTATTGAGATTAAAGACGTTGGAGATACACAGAAGGTGCTAAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCAACATCTCCTTTTCCCATTCAACTACTGCACAAGATGAATGATCTTGAAATAGTGTTCAATAGAGGTCGAGTTCCTATTGCCACATGGAACAAGACCCTATTGGCATCAAATTTACAATCATCTAGTGAGAGCTGTGGGAATGCCGGATTTTTGATGTTCAACTCAAAATTTCTTAAACCAAATGGAAGCAAGTTATTGGGCAATCAAAATCAACATACCATCACCCATGGTGAGAGAAACATTGTTACTGAACACACAACACAACTTGCTTGTGTTTTTACTGAAGAAGTGTGTGGAGATGGGGATTGGGCTCATGGAAGTTTTCCGCTTGAGGAATATATTCAGGCTCTGGATCGTTCCAAAGATGAGATGTACTATAATCACTCTCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGATCCTGTATACAAACAGAAGATGATGTAGAAACCTTGTCAAAAGTTGAGGGAGTTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGCAAAATCAATCAATGAATCTTTTCAAAGGAAAAATATTCTCACGATCAACTATCCGATACGGGAGGGAGATTCTTATGATATGAGGAAAAAACTCCCATTTTGTGTGGGGCTTTTATTACGGCTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGGCTCCTGCTTGTGTGATTGCATACCTACATTGGATGACGGATGTTTCCCTTCATGCAGCATATACTTGGGTCACTGGGATGCACACATGCAGACCTGACAGGCCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAATGGCAGACACGATGGACCTCCCACACATGCTGTCACGTTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTGGTAGGAGACTTTACTGGAAATTGGAAAGAGCCGCTGAAGGCAAAGCACCAAGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAAGGGAAATGTTAACAACATAATTGTGATCGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCAGCAGAAAGACGCCAACATTGTCAAAGTGATTGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGCTGGCGAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCTATCAGATTAGGTCCCAAATAG 1758 0.4414 MLPLQFGTHPPPSLFLSSSNSNACCSSSRLLYHHNRNNNKQHLLRSNVGTLSLRVFAVSGNSAFKMNLSEYLVTLEKPLGIRFALTSDGRIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNTLIEIKDVGDTQKVLKEQTSSFSLVLERPTSPFPIQLLHKMNDLEIVFNRGRVPIATWNKTLLASNLQSSSESCGNAGFLMFNSKFLKPNGSKLLGNQNQHTITHGERNIVTEHTTQLACVFTEEVCGDGDWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGVTAVLNFQSGTEAENWGINAKSINESFQRKNILTINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRAPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKAKHQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDKGNVNNIIVIGETASVRPSVQHQQKDANIVKVIERPLNEKERFMLAKAARCIAFSICPIRLGPK 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00636 585 Gene3D Protein tyrosine phosphatase superfamily 278 545 IPR029021 -
Gma16g00636 585 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 275 418 IPR029021 -
Gma16g00636 585 SUPERFAMILY E set domains 449 532 IPR014756 -
Gma16g00636 585 CDD DSP_laforin-like 284 430 IPR045204 GO:0019203|GO:0046838
Gma16g00636 585 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 34 584 IPR030066 GO:0005983
Gma16g00636 585 Gene3D Immunoglobulins 439 535 IPR013783 -
Gma16g00636 585 CDD E_set_AMPKbeta_like_N 452 531 - -
Gma16g00636 585 SUPERFAMILY PDZ domain-like 77 168 IPR036034 GO:0005515
Gma16g00636 585 ProSiteProfiles PDZ domain profile. 72 153 IPR001478 GO:0005515
Gma16g00636 585 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 34 584 - -
Gma16g00636 585 Pfam Glycogen recognition site of AMP-activated protein kinase 452 533 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00636 Gma-Chr16 7419447 7430845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00636 137 585 Protein tyrosine phosphatase (PTP) family AT3G01510 68.151 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00636 - - gmx:100806392 1167.14