Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00630 ATGGAGTTTGATCCAATCTTCCCAGCAGAAAAAATTCACTTCCTTTCTGGTATTTTCTCTGGGATCAAATCAGAGATCCCTGTTATCCCCATGTCACAAGAGAACAACAACAACACCATCTGCATGCACCAAAACAATTTCAACAACCATTTTCAGCACCTTCCCCTGAATGAACCAAACCATGACCATAACCACCACCATCCTACTATTACAAAAATTTTCACAGAGGGTTCTAATTCCTCCATCCTCACCCCATTGTTCTGTTTGTCCTCTTCTTCAGGTTACTCATACCGTAATGAGTCCCTCAGAGGAGGCTTTGCCAACAACAACAACAACTACAAACACTCCATCATGCCTTATGCACCAAACAGCACCCAAAATGAACCCATGCATGGCCCCAACAGAGCAATCTGGGATTTTTCCCAGAAAATTCCCCTTCAGTACTCTGGTGCAGGTGCAAGTGCAACTTCATCACAGCCTCATCAGGGTGCTCGTCCAATTGGTGGAACGCTTCGGGTTCAAAAAATGGTCTCACATCGCAAGAAGGAGTCATGGAACGAAGAGGAGGACAGAATCCTGATCGAAGCTCACAAGGAGGTTGGAAACAGGTGGGCCGAAATCGCAAGGAGAATGCCTGGTAGGACGGAGAACACCATCAAGAACCACTGGAACGCAACAAAGCGTCGCTTGAACGCCAAGAGGCTGAGGAACAAGCGCAGGGGTTTGAAGGGACCAACGCTTTTGGAGAGCTACATAAGGCAAGTCACTGCAAATGAAGAAACCCAAAAGGAGATGATCAAGAATTCCATGAGCAACATGAACCTGAAGGGCGAGAGTAGTAGCAACACCACCACCACTaataccaataccaataccaataccaGATATCCGCATCTCTTTCGGGTTTGGTATGAGAGCTCAGAGGGTGGGTTCAGTTCTGAGGAGGATGAGGCTGGGTGGAGTGTGCAGCAGCCACATGGTGTTGGTGGCGGCTATGTGCCTATGATGCTAAATGCTACTGTGGAAGATGGCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAAGAAGGAAATGGATCTCATGGAGATGATCATTAGAAAAGCTTAA 1125 0.464 MEFDPIFPAEKIHFLSGIFSGIKSEIPVIPMSQENNNNTICMHQNNFNNHFQHLPLNEPNHDHNHHHPTITKIFTEGSNSSILTPLFCLSSSSGYSYRNESLRGGFANNNNNYKHSIMPYAPNSTQNEPMHGPNRAIWDFSQKIPLQYSGAGASATSSQPHQGARPIGGTLRVQKMVSHRKKESWNEEEDRILIEAHKEVGNRWAEIARRMPGRTENTIKNHWNATKRRLNAKRLRNKRRGLKGPTLLESYIRQVTANEETQKEMIKNSMSNMNLKGESSSNTTTTNTNTNTNTRYPHLFRVWYESSEGGFSSEEDEAGWSVQQPHGVGGGYVPMMLNATVEDGTMGYDVAMEMAPEVQMKKEMDLMEMIIRKA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00630 374 SMART sant 181 229 IPR001005 -
Gma16g00630 374 CDD SANT 184 227 IPR001005 -
Gma16g00630 374 PANTHER MYB DOMAIN PROTEIN 100-RELATED 183 293 - -
Gma16g00630 374 SUPERFAMILY Homeodomain-like 179 232 IPR009057 -
Gma16g00630 374 MobiDBLite consensus disorder prediction 273 293 - -
Gma16g00630 374 Pfam Myb-like DNA-binding domain 182 224 IPR001005 -
Gma16g00630 374 Gene3D - 184 244 - -
Gma16g00630 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 180 231 IPR017930 -
Gma16g00630 374 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Gma16g00630 374 PANTHER MYB PROTEIN-RELATED 183 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00630 Gma-Chr16 7342203 7345119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00630 181 255 MYB Transcription Factor Family AT4G18770 64.000 1.11e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma16g00630 Myb_DNA-binding 8.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00630 K09422 - gmx:100805329 639.032