Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00611 CTTTCAGAAATCACCATGCCGAGTATATTGGCTGCATCAATATTTTCGGCACAGAGTGGTGAGACTGTGGCATTCTCTAGGAATGCACTGTTTTTGCTTGTTCTGTGTTTAACTTCAGGGATATGCAGTGGTCTGCGAAGCGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCGTCTACGAGAAAACTTATATACAGCAATTCTTTTTCAGGACATCTCCTATTTTGATAAAGAAAGAGTTGGTGACTTGACAAGCAGACTTGCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGATCTTCAGCTGATATTACGCAACTCTTGTCAGGGAACTGGAGCAATAATTAATTTGATGGCTTTATCTTGGCCTCTGGCATTATCTGCCTTGGTGATTTGTTCTATTTTATCTGCAATTTTCCTGGTTTATGGCCAGTATCAAAGAAAGGCAGCAAAGTTAATCCAAGATTTCACAGCTTGTGCCAATGACGTTGCTCAGGAGACACTTTCTTCAATAAGAATTGTCCGAGCTTATGGAACAGGGAAAAAAGAATTTGGAAGGTACAAGCAATTGCTACAGAGCTTAGCATTTATAAACGTTCGAGAGAGTGTGGCTTCTGGGTTCTGGAACCTGATCTTTAACACCTTATACCGTTCAACTCAGATATTTGCAGTGGTGTTAGTAGGTATGTCTGTTCTCAGATGTCACGTAACTGTGGAACAACTTACCAAGTATGTACTATACTGCGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGCTTAACATCATTACTGCAGTCCATTGGAGCATCTGAACAAATTTTCCAACTGATGAATCTTTTGCCCAGTGACCAATTCTTAGCCAAAGGCAAGTTAGTGGGGCATATTCAGTTTGCAAATGTATCATTTCATTATCCTGCAAGGAGTATGATGCCAGTTCTAGAATGCTTGAAATTCTCCATAGAAGCAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTACTTAACCTTCTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATCGATGGGTTTCCTCTTAACGAATTGGATATCAGGTGGCTGCGGGAGCACATTGGATATGTTGCACAGGAACCCCATCTCTTTCACATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCACGAACATAAAACAAGCAGATATTGAACGAGCAGCGAAAAAGGCCAATGCCCATGACTTTATTTCTTCACTTCCTAATGGATATGAAACCCTTGTTGATGACAATGCACTTAGTGGTGGACAAAAGCAGCGAATTGCTATCGCCAGAGCCATTCTTAGGGACCCTGTTATTATGATACTTGATGAAGCAACCAGTGCTCTAGATTCCGAGAGTGAGCATTATATCAAGGAGGTGCTGTATGCATTAAAAGATGAATCTAAAACGAGAACCATCATTATCATAGCACATAGGCTTTCTACTATAAAAGCTGCCGATAAGATCTTTGTTATGGATGATGGTCGCATCATTGAGATGGGAGATCATGAAGAGCTTATGCGCAACGATGGACTTTATGCAAAATTAACTAAAATTCAAGCAGATATTTTGACTTGA 1638 0.4048 LSEITMPSILAASIFSAQSGETVAFSRNALFLLVLCLTSGICSGLRSGCFGILNVTLVKRLRENLYTAILFQDISYFDKERVGDLTSRLAADCQRLSHVIGNDLQLILRNSCQGTGAIINLMALSWPLALSALVICSILSAIFLVYGQYQRKAAKLIQDFTACANDVAQETLSSIRIVRAYGTGKKEFGRYKQLLQSLAFINVRESVASGFWNLIFNTLYRSTQIFAVVLVGMSVLRCHVTVEQLTKYVLYCEWLIYATWRVTNSLTSLLQSIGASEQIFQLMNLLPSDQFLAKGKLVGHIQFANVSFHYPARSMMPVLECLKFSIEANQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLNELDIRWLREHIGYVAQEPHLFHMDIKSNIKYGCPTNIKQADIERAAKKANAHDFISSLPNGYETLVDDNALSGGQKQRIAIARAILRDPVIMILDEATSALDSESEHYIKEVLYALKDESKTRTIIIIAHRLSTIKAADKIFVMDDGRIIEMGDHEELMRNDGLYAKLTKIQADILT 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00611 545 PANTHER ATP-BINDING ABC TRANSPORTER 1 544 - -
Gma16g00611 545 ProSitePatterns ABC transporters family signature. 439 453 IPR017871 GO:0005524
Gma16g00611 545 Gene3D ABC transporter type 1, transmembrane domain 32 298 IPR036640 GO:0005524|GO:0016021
Gma16g00611 545 Pfam ABC transporter transmembrane region 12 253 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g00611 545 PANTHER ABC TRANSPORTER B FAMILY 1 544 - -
Gma16g00611 545 CDD ABC_6TM_TAP 1 279 - -
Gma16g00611 545 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 271 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g00611 545 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 301 539 IPR003439 GO:0005524
Gma16g00611 545 SUPERFAMILY ABC transporter transmembrane region 17 287 IPR036640 GO:0005524|GO:0016021
Gma16g00611 545 Gene3D - 299 540 IPR027417 -
Gma16g00611 545 Pfam ABC transporter 321 467 IPR003439 GO:0005524
Gma16g00611 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 540 IPR027417 -
Gma16g00611 545 SMART AAA_5 328 516 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00611 Gma-Chr16 7096018 7119568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00611 27 540 Calmodulin-binding Proteins AT2G36910 34.725 7.24e-77 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00611 - - gmx:100797529 1055.05