Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00607 ATGGAGAAAGAGGTTGTGGAAAGCCTTTGGAATGGTAACACAGAAATGCAGATTCAAGCAGCTGTGGAACTCAGGAAACTCAGCAGAAAGCAGAGGCACAACTTGGTGGAAAGTGGAGTCATGGTACCTCTAATTTCCATGCTTCATTATGAAAACTATGAAGCCATTGAAGCTGCTCTCTGTGCTCTACTTAGCCTTGCCTTTGGAAGTGAAAGAAACAAGTCAAGGATCATCAAGTCAGGAGCATTGCCAGTGTTGCTGAGTCTCTTCCATTGCCAAAGCCAAACGGTGGCGGAATTGACAATAGCTACATTGCTAACCATCTCCTCTTGCAACTCAAACAAGGTAGCAATTGCTTCCTCTGGGGCCATCCAACTCTTAGCTCAATTTCTCAACAGCACAAGTAGTAGCACTCAGTTCCAACTTGACACACTAGCCACTCTCCACAACCTCTCAACATGCCAGGAGATTATTACACCTTTTGTTGTCTCTTCTGGGGTCATAATTTCCTTGCTTGAACTTATCCACACATCAGAAAAATCATCCACGTTGGTTGAGAAAGCAATTGGGTTGCTAGAACACATTGTGACTTCATCAAAGAGTGCACTGTGTGAGGCTGCTAGTATTGGGGGAGCAGTTAGAACCTTAGTAGAGACTATTGAAGATGGGTCACTTCAAAGCAAAGAGCATGCTGTGGGGACACTCCTCCTTTTTTGCCAAAGCTCAAGAGAAAAATTTAGAGGAATGATATTGAGAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGAACTTGGAGAGCCAAAAATTTGGCCAAGAAATTATTGCTGCTACTGAGGGATTGCTCCAATTATAGTTCAACTAGTAATAAACAAATTAACTATGAGGTTGTGGAACGGATCATGGAAGAAATTGATGATGCTGAAGGGGAGGAATTGGCTGAGACTACTTTGAGATTGGTAGAGGAAATGATTGCAAAACTTAGTACATAA 999 0.4294 MEKEVVESLWNGNTEMQIQAAVELRKLSRKQRHNLVESGVMVPLISMLHYENYEAIEAALCALLSLAFGSERNKSRIIKSGALPVLLSLFHCQSQTVAELTIATLLTISSCNSNKVAIASSGAIQLLAQFLNSTSSSTQFQLDTLATLHNLSTCQEIITPFVVSSGVIISLLELIHTSEKSSTLVEKAIGLLEHIVTSSKSALCEAASIGGAVRTLVETIEDGSLQSKEHAVGTLLLFCQSSREKFRGMILREGVMPGLLQLSVDGTWRAKNLAKKLLLLLRDCSNYSSTSNKQINYEVVERIMEEIDDAEGEELAETTLRLVEEMIAKLST 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00607 332 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Gma16g00607 332 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 195 IPR000225 GO:0005515
Gma16g00607 332 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 311 - -
Gma16g00607 332 SMART arm_5 70 110 IPR000225 GO:0005515
Gma16g00607 332 SMART arm_5 200 240 IPR000225 GO:0005515
Gma16g00607 332 SMART arm_5 154 197 IPR000225 GO:0005515
Gma16g00607 332 SMART arm_5 111 153 IPR000225 GO:0005515
Gma16g00607 332 SMART arm_5 28 68 IPR000225 GO:0005515
Gma16g00607 332 Gene3D - 200 321 IPR011989 -
Gma16g00607 332 Pfam Armadillo/beta-catenin-like repeat 112 152 IPR000225 GO:0005515
Gma16g00607 332 SUPERFAMILY ARM repeat 4 313 IPR016024 -
Gma16g00607 332 Gene3D - 3 199 IPR011989 -
Gma16g00607 332 PANTHER U BOX DOMAIN-CONTAINING 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00607 Gma-Chr16 7018955 7020732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00607 3 283 U-box Gene Family AT2G23140 32.168 2.18e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00607 - - gmx:100811007 615.535