Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma16g00594 | ATGGTGAACAAGAGGATGGCTACGACGGGGAAGAAGGAAGGGAACAACTTGCTAGGGTTGCCGAACTTCACAGAATTAGGAAACGGGCGTTTCAAGTGCTTAGAAACAGGGCACGAGGTCCTCTCGAAGGACATAGCGTCCTACTCGCACAGCAAAAAATGCCGTTTGGGTCTCATCGATTTCGCCTTGTCCAATAACAAACCCCCTCTCAACATGTTCAAACAACACCCTCTCTGCCGTTCAAAGTTGATATGTAAGCTGACTGGAGACAATGTCAATAAGTCAGAGGAACATATCTGGAAGCATATGAGTGGGAAAAGGTTTCTCAATAAATTAGAGCAAGAGGAAGAAGAAAAGTTGTTGTGTCATGGATTGGAAGGTGAAGAGAGCTTACATGAGTCAAAAAGTGCAGATGGTGGAAAAAAGGATAGAATGAAGAAGAAGAAGAAGAAAAAGAATAGGGTCAAGGAAATTGATGAGGAGAAATTGCAGGTGTCAAAAAGTGCAGATGGTGCAAAAAAAGATAGAATGAAGAAGGAAAATAATAAGGACAAGGGAATTGAGGAGGTTATATCTGAAGTTAGGAAGTCTTCCAATGAGAACAGTGACACTGAAGACGAAGACTTCTGGATGCCTCCTGCTGGTGATCGTTGGGACAATGATGATGGTGGCGATAGATGGGGTTCAGAGTCAGAGCAGGGAACTGAAGAGGGAGATGTAATTGATGGTGATGCTGCTGAGGATTGCAAGGAGTCAGACGAGTTGTCATCAAGGACGAAAAGAATGTCGATAGAAATTGGACCAAGCAGCTTTGCTACAAGAAAAAAGAAAAAACCACTTCAAGAAACATTGTCAGAATCAGAAGGTGGTCTTTTAGCATCATGGAGTAGTGGAACTTCTAATGCAGACTTCACAGTGGCACAAGATGGTTCAGGTACCCACAAAACAATCACCGAAGCAATAGATGCACTTGATGCAATGGATAATAATCGTCCTTCAAGACCGATTATATACGTAAAATCAGGGGTCTACAACGAAAAAGGTTATTCAACTATTAGCTCAGTCACATTTGATGTATCAGGGGATGGGTTTTGGGCGAGAGATATGACATTTGAGAACAGAGCAGGGCCAAGAGGGCACCAAGCAGTGGCATTAAGGGTCAGTTCAGATCTATCAGTCTTCTATAAATGTAGCTTCAAAGGTTACCAAGACACTCTTCTACAATTTTATCGCGATTGCCACATATATGGCACCATTGATTTTATATTTGGTGATGCTTCAGTGGTTAAGCCTGCATATGATTTTGACTCTTCTAAGGATTCAATCACGAGCTACTTAGGCAGGCCTTGGAAACAATACTCAAGGACTCTATTTCTAAAGACAAATTTAGATGGGTTGATTGACCCAAATGGATGGGGTGAATGGATAAAAGACTTTGCACTTTCAACTTTGTACTATGGAGAGTATATGAACACAAGGAGTGGTGCCTCTACCCAAAATAGAGTGACATGGTCTGGTTTCCATGTTTGA | 1530 | 0.4203 | MVNKRMATTGKKEGNNLLGLPNFTELGNGRFKCLETGHEVLSKDIASYSHSKKCRLGLIDFALSNNKPPLNMFKQHPLCRSKLICKLTGDNVNKSEEHIWKHMSGKRFLNKLEQEEEEKLLCHGLEGEESLHESKSADGGKKDRMKKKKKKKNRVKEIDEEKLQVSKSADGAKKDRMKKENNKDKGIEEVISEVRKSSNENSDTEDEDFWMPPAGDRWDNDDGGDRWGSESEQGTEEGDVIDGDAAEDCKESDELSSRTKRMSIEIGPSSFATRKKKKPLQETLSESEGGLLASWSSGTSNADFTVAQDGSGTHKTITEAIDALDAMDNNRPSRPIIYVKSGVYNEKGYSTISSVTFDVSGDGFWARDMTFENRAGPRGHQAVALRVSSDLSVFYKCSFKGYQDTLLQFYRDCHIYGTIDFIFGDASVVKPAYDFDSSKDSITSYLGRPWKQYSRTLFLKTNLDGLIDPNGWGEWIKDFALSTLYYGEYMNTRSGASTQNRVTWSGFHV | 509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma16g00594 | 509 | MobiDBLite | consensus disorder prediction | 154 | 203 | - | - | |
| Gma16g00594 | 509 | ProSitePatterns | Pectinesterase signature 2. | 415 | 424 | IPR033131 | - | |
| Gma16g00594 | 509 | MobiDBLite | consensus disorder prediction | 128 | 289 | - | - | |
| Gma16g00594 | 509 | Pfam | Surfeit locus protein 2 (SURF2) | 11 | 277 | IPR008833 | - | |
| Gma16g00594 | 509 | SUPERFAMILY | Pectin lyase-like | 299 | 508 | IPR011050 | - | |
| Gma16g00594 | 509 | PANTHER | PECTINESTERASE | 278 | 347 | - | - | |
| Gma16g00594 | 509 | Coils | Coil | 187 | 207 | - | - | |
| Gma16g00594 | 509 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED | 347 | 429 | - | - | |
| Gma16g00594 | 509 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED | 427 | 509 | - | - | |
| Gma16g00594 | 509 | MobiDBLite | consensus disorder prediction | 235 | 249 | - | - | |
| Gma16g00594 | 509 | Pfam | Pectinesterase | 303 | 347 | IPR000070 | GO:0030599|GO:0042545 | |
| Gma16g00594 | 509 | Pfam | Pectinesterase | 348 | 429 | IPR000070 | GO:0030599|GO:0042545 | |
| Gma16g00594 | 509 | MobiDBLite | consensus disorder prediction | 210 | 233 | - | - | |
| Gma16g00594 | 509 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED | 278 | 347 | - | - | |
| Gma16g00594 | 509 | Gene3D | - | 349 | 509 | IPR012334 | - | |
| Gma16g00594 | 509 | Gene3D | - | 297 | 348 | IPR012334 | - | |
| Gma16g00594 | 509 | PANTHER | PECTINESTERASE | 347 | 429 | - | - | |
| Gma16g00594 | 509 | PANTHER | PECTINESTERASE | 427 | 509 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma16g00594 | Gma-Chr16 | 6840489 | 6852233 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma16g00594 | 289 | 509 | Carbohydrate Esterase | AT3G60730 | 50.676 | 6.57e-92 | 288 |