Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00579 ATGTGCAACAAGAACAGTCCTTCTTCTTCGGACATTCAAGCAACCTCTATTATgaagaggacgcggaagccgaatagaaggtatcatcataataccacttcttcctcttcctcttcttcttcttcttcttcttcttcttcctccacgacgtcgtttaagccgcaccggcgcgggaacagAACCAAGACGCGGAAGCCCAAGTTTGTCAGCCTGCGGCTTCAGTTATCCGATCCTAAGAAAAAGATGAAAACAACCCAGCCCAAGCCCAAGTCCAAGCCCAAGCCTAAGGCCCAACAACAAGAACAGCAGCAGCAACAGCCGCAGCTGAATCTCTTCCCTCTCCATCCGGACCACCATGACATGCACGAGGAGCAGAACGTGGCGCTTCTCTTTAGCTCCGATGGTGGGGCCACACTCAACGGACTACTGGAGGAGGAGACGACTACGACGGAGGAAGGGTCGATGTCGGTGCTGACGTGTCCGGCGGAGGACACCGGGAACTGGCTGGTACGGAAGGCGATGCGGCGGAGGGAGAGCGAGGAGGGGAGTGAAGAGCGGTGGGTGTGCTACTCGGAGGTGGTGGAGGAGAAGAAGGAGGCCATGGAGGAGGTCACGAGTTATTGCGTCACGGGGGAAACGAAGACGAAGACGAAAACGCCGTCGTTTGGATTGTTGTCGTTGAAGCTGGATCACCAGGGGATATTGAATGCATGGTCTGATAAAGGCTCTCTCTACGTCGCGGCGGAGGAGGAGGAGGAGGGGGGCCCACAGACTGTCCCTGACATATTCAATGGTTTCCTTTTTCATAATGTTGCATGGGACGGTTTGGGGAGTGGTGGTGTTGTTGGGAATGCATGGAATGTTCCTGAAAATTGTGGGGCTAACAAGACGAATGTGAAGGAAGAAATGGGTTGGAAGTTGGGGCAGAGAGAGGCAAGTTTGCAGAGATACAAGGAGAAGAGGCAAAGCAGGCTCTTCTATAAGAAAATCCGTTATGAAGTTCGCAAGCTGAATGCTGAGAAACGGCCCAGGATGAAGGGACGATTTGTGAAGAGGGAATGA 1062 0.4689 MCNKNSPSSSDIQATSIMKRTRKPNRRYHHNTTSSSSSSSSSSSSSSSTTSFKPHRRGNRTKTRKPKFVSLRLQLSDPKKKMKTTQPKPKSKPKPKAQQQEQQQQQPQLNLFPLHPDHHDMHEEQNVALLFSSDGGATLNGLLEEETTTTEEGSMSVLTCPAEDTGNWLVRKAMRRRESEEGSEERWVCYSEVVEEKKEAMEEVTSYCVTGETKTKTKTPSFGLLSLKLDHQGILNAWSDKGSLYVAAEEEEEGGPQTVPDIFNGFLFHNVAWDGLGSGGVVGNAWNVPENCGANKTNVKEEMGWKLGQREASLQRYKEKRQSRLFYKKIRYEVRKLNAEKRPRMKGRFVKRE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00579 353 MobiDBLite consensus disorder prediction 91 110 - -
Gma16g00579 353 MobiDBLite consensus disorder prediction 1 19 - -
Gma16g00579 353 ProSiteProfiles CCT domain profile. 310 352 IPR010402 GO:0005515
Gma16g00579 353 MobiDBLite consensus disorder prediction 1 110 - -
Gma16g00579 353 Pfam CCT motif 310 352 IPR010402 GO:0005515
Gma16g00579 353 MobiDBLite consensus disorder prediction 30 54 - -
Gma16g00579 353 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 47 353 - -
Gma16g00579 353 PANTHER CCT MOTIF FAMILY PROTEIN 47 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00579 Gma-Chr16 6677420 6682984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00579 225 352 C2C2-CO-like Transcription Factor Family AT1G73870 40.769 7.77e-19 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma16g00579 CCT 8.1e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00579 - - gmx:100798231 585.489