Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00564 atgggaagacaaccttgttgtgataaggttggtttgaagagaggtccatggactattgaggaggatcacaagctcatgaactttattctcaacaatggtatccattgctggagatcggttcccaaactagcagGTCTTCTAagatgtggaaagagttgtagacttagatggattaattatctgagaccagaccttaagagaggtggcttcacagaaatggaagaggatcaaattatagaactacattcaggtcttggtaacaGATGGTCTAAGATTGCCTcacatttccctgggagaacagacaatgaaatcaagaaccattggaacacaagaatcaaGAAGAGGCTGAAACTCCTTGGTCTGGACCCTGTGACCCACAAGCCAATTGAGCAAAAGGAAAATACTGATGAGAACACAAATAAGACCAATCCACACCCTTCTATTTTTGGAGGGTCTGAAGAAAATGTGGAGATTAAATCCTTGGAAAATGGTGGCACCAAAGAAATGGCAAAAACAGAAGGGAAAAGAGAAGAAAACAATAAGGTGATTAATTGGGATGATACCTCTGAACTTTTAAACAATTTTGAAATGCTATGCTCAAAGTTGGACTTGGGATCATGGATGATGAGTCAAGAAACCAATACTAGTACTAATTCCTTATGTAGTTCTTCTGTCTCTATGGATGACACTAGTCACCTCTCTATGGACGAATCCTCTTATCTTCAGGAAAACTCCTTACAGCAATGGGTTGATAGTATGGATTCCATTCTCTCATGGGATGGCTTCAATCCTCTTGATCAAGACATTTTGTTCTTGGAAAATAGGGAATAA 831 0.2443 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRSVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIELHSGLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKPIEQKENTDENTNKTNPHPSIFGGSEENVEIKSLENGGTKEMAKTEGKREENNKVINWDDTSELLNNFEMLCSKLDLGSWMMSQETNTSTNSLCSSSVSMDDTSHLSMDESSYLQENSLQQWVDSMDSILSWDGFNPLDQDILFLENRE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00564 276 Gene3D - 69 145 - -
Gma16g00564 276 SMART sant 13 63 IPR001005 -
Gma16g00564 276 SMART sant 66 114 IPR001005 -
Gma16g00564 276 CDD SANT 16 61 IPR001005 -
Gma16g00564 276 MobiDBLite consensus disorder prediction 129 151 - -
Gma16g00564 276 Gene3D - 11 67 - -
Gma16g00564 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma16g00564 276 CDD SANT 70 110 IPR001005 -
Gma16g00564 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma16g00564 276 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gma16g00564 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma16g00564 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma16g00564 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 254 - -
Gma16g00564 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma16g00564 276 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma16g00564 276 PANTHER MYB DOMAIN PROTEIN 40 2 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00564 Gma-Chr16 6343150 6344423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00564 1 198 MYB Transcription Factor Family AT5G16600 57.426 1.57e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma16g00564 Myb_DNA-binding 6.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00564 K09422 - gmx:100783231 565.844