Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00561 ATGGAGAACAAAAGAATGGTGGCGAATGAAGAACAGAGGCGCAGCCCCAGAAACCAGAAGGTCCCATTAACTGATTCCAATGGCCAAAACATGGCAACCCTTTTTAGCCCAAGGTTCAAATCCGCGGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCTAGCCTCATCGTTGAAGACACGCCAGATAGAGATCCCAAGCACAAGAAGCGCTATGTTTTGCACTCCAAAACCCCACCAAACTCATCAAGAGCTCAGAGGAGTCCACAAGCTCCAATCCCTGTAGTACTTGATCTTGATGCAGAAGAAACTCCCAAAATAGATAGTGGGAGAAAGAAGAAAGAaaagaaagcttgtgttgagaatgagggaaagaaagcgtgtgttgagaatgagggaaGCAAAGTAGGAGAGGGTGGTAATGAATCGAAAGAGAAGAACCCAGGTGACGCTTCATCTAGTTCTTCTCTTCCCTGCATTGATAAACTAAGGGATGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCAAAATGCAGGCAATTAATCAGCAATGGAAGATCATGCACTGTGAACACAGTTCTCTGGAACACAATCCAGCTCCTGTTTCCACAAGAAGTTGAAGCAAGAAAAGAAGCTAGTGCCTTGAATAGTCGCCAACAAGCTCAAAACCTGAGTCCAGAGTCAGCATTTTTTGCTTACCTAAGGAACGACACACAACCTTTAAGGGTGGCATCAAGCAGAAGCACGAATTCAATGaggagtgggacaacagcaacaacaacaacaacaacaacaacaacatcaacaCAGGAAAATGAGGATGCTGCATTGGCTAGAATGTTGCAGAGAGAAATTGATGAGCAAAGAAGCCTAGGAACGACTCGAACTCGGTTGGCGAGATTGAGGGCAAGAAGAGGAGGAGGAGGGGTTTCTACTAGCCAACATGAGGATGCAGCTTTAGCTCTAAGGATGCAGAGAGAAGAGTTCATGCAAACTTATAGAGGGAGCAGCCAGGAACAGTCTAGCAGGCTAACCTCAACATCATTAGCTAGAGAAAATTTGAGGGCTATGGCATCTAGAGCCATGAACAGAAGAAGGTGA 1194 0.4179 MENKRMVANEEQRRSPRNQKVPLTDSNGQNMATLFSPRFKSAAAMAGWDEEALLLASLIVEDTPDRDPKHKKRYVLHSKTPPNSSRAQRSPQAPIPVVLDLDAEETPKIDSGRKKKEKKACVENEGKKACVENEGSKVGEGGNESKEKNPGDASSSSSLPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKEASALNSRQQAQNLSPESAFFAYLRNDTQPLRVASSRSTNSMRSGTTATTTTTTTTTSTQENEDAALARMLQREIDEQRSLGTTRTRLARLRARRGGGGVSTSQHEDAALALRMQREEFMQTYRGSSQEQSSRLTSTSLARENLRAMASRAMNRRR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00561 397 MobiDBLite consensus disorder prediction 133 147 - -
Gma16g00561 397 PANTHER - 344 395 - -
Gma16g00561 397 PANTHER UNCHARACTERIZED 344 395 - -
Gma16g00561 397 MobiDBLite consensus disorder prediction 274 303 - -
Gma16g00561 397 MobiDBLite consensus disorder prediction 1 18 - -
Gma16g00561 397 SUPERFAMILY RING/U-box 163 234 - -
Gma16g00561 397 MobiDBLite consensus disorder prediction 133 158 - -
Gma16g00561 397 MobiDBLite consensus disorder prediction 364 383 - -
Gma16g00561 397 MobiDBLite consensus disorder prediction 64 118 - -
Gma16g00561 397 MobiDBLite consensus disorder prediction 1 32 - -
Gma16g00561 397 PANTHER - 22 251 - -
Gma16g00561 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 240 IPR013083 -
Gma16g00561 397 ProSiteProfiles Zinc finger RING-type profile. 171 210 IPR001841 -
Gma16g00561 397 PANTHER UNCHARACTERIZED 22 251 - -
Gma16g00561 397 MobiDBLite consensus disorder prediction 103 118 - -
Gma16g00561 397 SMART ring_2 171 209 IPR001841 -
Gma16g00561 397 Pfam Zinc finger, C3HC4 type (RING finger) 171 209 IPR018957 GO:0046872
Gma16g00561 397 ProSitePatterns Zinc finger RING-type signature. 186 195 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00561 Gma-Chr16 6301533 6304258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00561 163 261 C2H2 Transcription Factor Family AT5G39550 32.353 2.25e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00561 - - gsj:114390146 719.539