Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00558 ATGGTCGTGAGTGGTTCCTCCCCACTAACTTCGAAGAGGAGAAGGGTCACCAACTTTTGTTCCACCGACATGGACGCTGAAACTGCTAAGGCCAAGCTTGCTGCTGTGAAAGAAAGATTTGGACGAGAGATCCATGTTTTTGAAACATCAGTTCTTTCTTCATCTTCAAAGGCTGCGTTATCCAATGGAGAGGAGACGGATGACTTCTATGAGTTTACTGCTGAAGATTATTACAGACTTTTGGCTACTAAAAAAGAAGATAAATTCTTGAAGACTCGAAAACTACGAGAAGCAGAAGAGGCAGCTCGTAGGTCAAGAATAACCAAAGCTGTAATCAGAATTCGCTTCCCTGATAATCACACTTTGGAGGCTACATTCCACCCATCCGAAACAATCCAGAGTTTAATTGATCTCCTCACTAAAGTTATTGCACAACCAGAGCAACCATTCTATATATACACTACTCCGCCTAAGAAGGTGATCAATGATATGTCTCTGGATTTTTACACTGCTGGCTTTTGTCCTGGTGCCATTGTGTACTTCTCATACAATGTCCCAAAAGGTGATAGCACTGTGGGTGACCATACTAGTCCTTATCTCCAAGAAGATATCTTGTCTTTAAAGGATTTGCACATTGCAATTGATCAAGGCCAGCAATCTGAGCCTGTAGTACAGCCAGACCCTGAACCTACCGTAGCAGCACACCCCCCTCCTGTTGAAGAACGCAAACCCACCGAGAAAAAGGTTGTTAAACCAAAGTGGCTAAAAATGTGA 774 0.4315 MVVSGSSPLTSKRRRVTNFCSTDMDAETAKAKLAAVKERFGREIHVFETSVLSSSSKAALSNGEETDDFYEFTAEDYYRLLATKKEDKFLKTRKLREAEEAARRSRITKAVIRIRFPDNHTLEATFHPSETIQSLIDLLTKVIAQPEQPFYIYTTPPKKVINDMSLDFYTAGFCPGAIVYFSYNVPKGDSTVGDHTSPYLQEDILSLKDLHIAIDQGQQSEPVVQPDPEPTVAAHPPPVEERKPTEKKVVKPKWLKM 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00558 257 CDD UBX2_UBXN9 110 183 - -
Gma16g00558 257 SUPERFAMILY Ubiquitin-like 84 181 IPR029071 -
Gma16g00558 257 Pfam UBX domain 108 164 IPR001012 GO:0005515
Gma16g00558 257 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1-RELATED 7 257 - -
Gma16g00558 257 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 7 257 IPR044232 GO:0032984|GO:0051117
Gma16g00558 257 MobiDBLite consensus disorder prediction 216 257 - -
Gma16g00558 257 Gene3D - 99 182 - -
Gma16g00558 257 MobiDBLite consensus disorder prediction 239 257 - -
Gma16g00558 257 ProSiteProfiles UBX domain profile. 105 181 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00558 Gma-Chr16 6260013 6264129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00558 22 138 C2H2 Transcription Factor Family AT2G01650 29.752 2.29e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00558 K15627 - gmx:100792947 488.804