Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00550 ATGGACATGGGCTTGAAACGAACGGTTGGCACGAGGCCCATAAGGAAAAGCCCAAACGCTAAGAGCAATTGTGGTGACGAGATCGGAACTTCCCTCACTTCTCTTCCCTTTGACCATTCAACCTTCCTCGCCTTTGCCTCCGTTTCCGTGACTGAGATGGCTGGAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCTACTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTGTCAGGTCTTTTCAGTTTTTCAACAATGGCAGCAGCTGATGAAGCTGAACATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCGTATCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAACGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGTGATCGTTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCAGATCTAAGTCTTGTTACCAAAGCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACTCCTGCTACAGAAGCTCAGATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTGTCATTGGCACTACTTCAGGCTGCCTATTACCGCCGCTTGAGGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 1080 0.4639 MDMGLKRTVGTRPIRKSPNAKSNCGDEIGTSLTSLPFDHSTFLAFASVSVTEMAGGVIQQILRRKLHPRFTNSPLLSPIVAKKDDAGSTGSQSLRALALIGAGLSGLFSFSTMAAADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYTEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLVTKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00550 359 SUPERFAMILY Cytochrome c 123 313 IPR036909 GO:0009055|GO:0020037
Gma16g00550 359 MobiDBLite consensus disorder prediction 1 25 - -
Gma16g00550 359 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 57 359 - -
Gma16g00550 359 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 314 358 IPR021157 -
Gma16g00550 359 PRINTS Cytochrome C1 signature 314 329 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 PRINTS Cytochrome C1 signature 264 275 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 PRINTS Cytochrome C1 signature 148 167 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 PRINTS Cytochrome C1 signature 226 250 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 PRINTS Cytochrome C1 signature 193 213 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 PRINTS Cytochrome C1 signature 128 147 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 PRINTS Cytochrome C1 signature 275 294 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 PRINTS Cytochrome C1 signature 295 314 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 Gene3D - 315 358 - -
Gma16g00550 359 Gene3D - 119 314 IPR036909 GO:0009055|GO:0020037
Gma16g00550 359 ProSiteProfiles Cytochrome c family profile. 142 249 IPR009056 GO:0009055|GO:0020037
Gma16g00550 359 Pfam Cytochrome C1 family 130 346 IPR002326 GO:0009055|GO:0020037
Gma16g00550 359 PANTHER CYTOCHROME C1 57 359 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00550 Gma-Chr16 6119131 6124055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00550 53 359 Chloroplast and Mitochondria Gene Families AT3G27240 85.761 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00550 K00413 - gmx:100789781 601.282