Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00548 ATGTCACTCATTATCTGCTTCTTTGTCCTGCAATTGTTAACATGGTCAAGGGTGCTTCTAGCTCATGAAAGTAGAAACAACTGCTCAAGGTCCATTATGAGCATAGGTGCTGTGCTTGATTTGAGTTCACAAATGGGAAAGCATCAGAAGATAGCCATGCAAATTGCACTCCAAGAGTTCAATCGGTTGAGTTGTTCCAAGCTGGATTTGAAGATTGAAAATTCCCATGGGAATTCAGCTCACGCAGTTGCTAGTGCCATGGATCTCACCCAGAGCAAGCAAGTGTTAGCCATCATAGGCACAATAACACACAGTGAAGCAAATCTGGCAAGTGAATTTGATGACACCATAAAAAATATTCCTATCTTGTCTCTAATTTCACCTGTAGCCAGATCAGAGAAATCATCTCCTCTATTGCCATACTTCATCCAAGAGGGATATGATATCAACCTTCACATGCAATGCATTGCAGCCATTGTGGGAGAATTCAGATGGCGAAAGGTGACAGTAATCTATGAACTTGATAACTGGTTTTCCTCTGATCCAGGGATTCTACTCGACCTCTCCTATTCCCTTAGACTTGTTGGATCAGAGATTGATAATCATGTAGCGTTGCCTTCCTTATCCTCTCTATTAGATCCAAAATCTACCATTGAAAATGAGCTTAATAGGCTCAAAAACAAAAGTAACAGGGTCTTCTTGATTGCGCACTCTTCTTTAGAGCTGGCAAACATACTTTTTGAGAAAGCAAAGCAAATGAGTTTAGTGGGAAAAGGTTCTGTGTGGGTTATCCCAGATGGGGTTGCTGGCCTACTTGATTCAGTTAACTCTTCTTCAATCCTTAACATGCAGGGTGTTATTGGATTTAAGACACATTTCATGGAAACAAGCAAAGCATTTAGAAGGTTCAAATTCAAATTCCGAAGAAGGTTTGTACTGGAGTTCCCTGAAGAAGAGAACATTAACCCAAGTTTCTTTGCACTTCAATCATATAAAGCAACCCGGGCAGTTGCTCAAGCTGCAAGGGAATCGCAAGGGAAGTTAACCCTTGAACAATTATTCAAAAGTAATATATCCAGAAATGGCAAATTTTGGCAATCACAAACCTTCAATATAATTAATGTGATAGGTAAAAGTTACAGAGAGTTAGCATTATGGTCTCCAGAACTAGGTTTCTCCAAAAACCTTATTACACAGCAGCTGACAGAGATGAACACAAATAGTGCTTCTAGTGGAATTTTGAGTACTGTTTATTGGCCTGGAGGTATACAATTTGTTCCTAAGGGATGGACTCACAGCACCGAACAAAGAAAATTGCAAATAGGAGTGCCTGCAAAAGGTGCCTTCACTGAGTTTGTGAATGTGACATATGATAAGAACAGGAATAAAACTTCTATCACAGGATTCTCAATCGATGTCTTTAAAGAAGCCGTTCATAATTTGTCTTATGACTTGGACTTTGCGTTTGTTCCCTTTAATGGGTCTTATGATGAAATGGTAGAGCAAGTCTATAACAAGACATTGGATGCTGCTGTCGGAGATACATCAATAATGGCATACAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGACTCTGGTATTGACATGGTGGTTACAGAGCAATCAGCTAAATCAAAAGAAACATGGATCTTTTTAAAAGCCTTCACAAAAGGGATGTGGTTGATGATGGCAGCATTACACATTTTCGTAGGATTTGTCATTTGGTTGATCGAAAGGCAAGTTAATGAAGAACTAAAAGGATTCGGGTCCATGCTTTGGTTCTTAGTCACTGTAATATTCTATGCACACAGAGAACCAATTACAAGCCCCCTGGCTCGAACTGTGTTGGCACCATGGCTATTTGTTATACTCATTGCAACTAGTACATTCACAGCAAGTTTGACTTCCATGATGACTGTTTCGCAACTAGAGCCATCTGTGTTAGATATCCAAACCCTTCAGGAAAGAAATTCCCCTGTCGGTTGTAATGGAAATTCGTTCATTGTGAAGTACCTGATTGACATACTAAAATTCAAGCCTGAGAACATCAAGAAAATTAACTCTATAGGTGATTACCCTGCTGCGTTTCAGAACAAGGATATTGAAGCCGCTTTCTTTGTTACCCCTCATGCTAAAATCTTTCTGGCAAAGTACTCGTGCAAGGGCCTCATCAAAGCAGGGAGCACGTTCAAGCTTGGTGGTTTTGGTTTTGTTTTTCCCAAGGGTTCGACTTTGGCTACTGACTTATCCGAGGCATTGCTGAAAGTGATAGAGAAACGAGAAACAGAACAACTAGAAAAAGATATGCTATTGATAGGAGGCAATGCCAATTGCTCTCCTTCCGAGAGCAAGGCAAAAGGGAGTATGAGAAGTATTAGTACTGCCACAGTAACAAGAAATGCCGAGGAGACTGTCATTAGTGATCAGCAAAGCACAATGAATGTTGAGCTTATTGATGTAGTATTGGCTGCTCATGCTTCACATGGTGTTAGGCAGATCATTAGATTTAGAGATGCTAGTTATGATAATGTTGTGGTAAACCCACTCCTATATGCTTCCCAAGGACTTCGTTACAAGAGGAAGCTCCAAGTCATCCTTACAACTGACATAGATAATCTGGGAAAGGCAGGTGATACTGTCAAAGTTGCCCCTGGATATTTTCGCAACCACCTAATGCCCAAGCTCCTTGCTTTCCCTAACATTGATAAGTTTGCTCATCTCCTCAATGAGCAGCGCAAGATATATCAACCAACTGAAGAAGAAAAACAAGAAGATGTCACTCTTGTTAAAGAGTCAAAGGAAGATATGATGAAAGAGTATGAAAAGGCAGCATTGCGTCTTGATAAAGCTAAGCTGGTCTTGCGGAGATTAATCAATGTTCAAAAAGCCAAGTCACGTGAATCAAAAGATGACCCCTTGGAGTTACGTTATCCTGTGACAAAAGATATTCTTGTGGCTGAGGTGTCAAGACAAATCTGTGTGAACGTTGCACCTGATAACCTGCATCTTCCATCACCTTTAGCCACATTGGGAGAATATGAGGTGCCACTGCGTTTACCAAGGTCCATCCCGTTGCCAGAGGGCAAGGTTAATTGGAGTTTGAAAGTTAAAATCAGGAGTAAATAA 3132 0.4049 MSLIICFFVLQLLTWSRVLLAHESRNNCSRSIMSIGAVLDLSSQMGKHQKIAMQIALQEFNRLSCSKLDLKIENSHGNSAHAVASAMDLTQSKQVLAIIGTITHSEANLASEFDDTIKNIPILSLISPVARSEKSSPLLPYFIQEGYDINLHMQCIAAIVGEFRWRKVTVIYELDNWFSSDPGILLDLSYSLRLVGSEIDNHVALPSLSSLLDPKSTIENELNRLKNKSNRVFLIAHSSLELANILFEKAKQMSLVGKGSVWVIPDGVAGLLDSVNSSSILNMQGVIGFKTHFMETSKAFRRFKFKFRRRFVLEFPEEENINPSFFALQSYKATRAVAQAARESQGKLTLEQLFKSNISRNGKFWQSQTFNIINVIGKSYRELALWSPELGFSKNLITQQLTEMNTNSASSGILSTVYWPGGIQFVPKGWTHSTEQRKLQIGVPAKGAFTEFVNVTYDKNRNKTSITGFSIDVFKEAVHNLSYDLDFAFVPFNGSYDEMVEQVYNKTLDAAVGDTSIMAYRYHLVDFSQPYVDSGIDMVVTEQSAKSKETWIFLKAFTKGMWLMMAALHIFVGFVIWLIERQVNEELKGFGSMLWFLVTVIFYAHREPITSPLARTVLAPWLFVILIATSTFTASLTSMMTVSQLEPSVLDIQTLQERNSPVGCNGNSFIVKYLIDILKFKPENIKKINSIGDYPAAFQNKDIEAAFFVTPHAKIFLAKYSCKGLIKAGSTFKLGGFGFVFPKGSTLATDLSEALLKVIEKRETEQLEKDMLLIGGNANCSPSESKAKGSMRSISTATVTRNAEETVISDQQSTMNVELIDVVLAAHASHGVRQIIRFRDASYDNVVVNPLLYASQGLRYKRKLQVILTTDIDNLGKAGDTVKVAPGYFRNHLMPKLLAFPNIDKFAHLLNEQRKIYQPTEEEKQEDVTLVKESKEDMMKEYEKAALRLDKAKLVLRRLINVQKAKSRESKDDPLELRYPVTKDILVAEVSRQICVNVAPDNLHLPSPLATLGEYEVPLRLPRSIPLPEGKVNWSLKVKIRSK 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00548 1043 SMART GluR_14 438 770 IPR001320 GO:0015276|GO:0016020
Gma16g00548 1043 Gene3D - 737 769 - -
Gma16g00548 1043 Pfam Bacterial extracellular solute-binding proteins, family 3 463 769 IPR001638 -
Gma16g00548 1043 Coils Coil 932 955 - -
Gma16g00548 1043 Pfam Ribosomal protein L9, N-terminal domain 865 900 IPR020070 -
Gma16g00548 1043 Gene3D - 864 920 IPR036935 -
Gma16g00548 1043 Gene3D - 662 736 - -
Gma16g00548 1043 PANTHER GLUTAMATE RECEPTOR 30 790 - -
Gma16g00548 1043 SUPERFAMILY Periplasmic binding protein-like II 414 769 - -
Gma16g00548 1043 SUPERFAMILY L9 N-domain-like 864 917 IPR009027 -
Gma16g00548 1043 Gene3D - 431 556 - -
Gma16g00548 1043 CDD GluR_Plant 437 772 - -
Gma16g00548 1043 Gene3D - 23 148 - -
Gma16g00548 1043 SUPERFAMILY Periplasmic binding protein-like I 30 430 IPR028082 -
Gma16g00548 1043 Pfam Ligand-gated ion channel 770 788 IPR001320 GO:0015276|GO:0016020
Gma16g00548 1043 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 790 - -
Gma16g00548 1043 Pfam Receptor family ligand binding region 50 352 IPR001828 -
Gma16g00548 1043 Gene3D - 149 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00548 Gma-Chr16 6068079 6101445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00548 86 780 Ion Channels AT5G11210 34.043 6.16e-119 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00548 - - gmx:100778941 1482.23