LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma16g00521	ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCTGCATCTGGGCCCCACTTCTCCGGCCTGAGACTCGACGGCCGGGTCCCGTCCTCCGCCACCGCCGCGTCCTCCACTCCCGATTCAACCCTAACCCTCGATTCCCTTCCCAATCAACCCTTCGTCATAGGAGTTTCTGGAGGTACTGCCTCGGGCAAAACCACCGTCTGCGATATGATCATTCAGCAACTCCACGATCACCGCGTTGTCCTCGTAAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGTGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGAGGAAGCTCATCAGTGGCCAGGGAGTGCATGTTCCCATTTATGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCATGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACGCAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTTGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACTGGAGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGCAAAGGCATTAAAATTGGTAAAATTCTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCCATTGAATTACTCATTCAGAAAGGAGTACCAGAAAGTCACATTATATTCCTGAATCTCATTTCTGTAAGTTAA	1287	0.4584	MPEETTSIDYVMEAASGPHFSGLRLDGRVPSSATAASSTPDSTLTLDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLNPEELERVHEYNFDHPDAFDTEQLLECTRKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDADADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISVS	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma16g00521	428	TIGRFAM	udk: uridine kinase	53	253	IPR000764	-
	Gma16g00521	428	CDD	UMPK	55	253	IPR000764	-
	Gma16g00521	428	PANTHER	URIDINE KINASE	40	427	-	-
	Gma16g00521	428	Gene3D	-	257	428	IPR029057	-
	Gma16g00521	428	Gene3D	-	50	256	IPR027417	-
	Gma16g00521	428	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	49	246	IPR027417	-
	Gma16g00521	428	SUPERFAMILY	PRTase-like	256	426	IPR029057	-
	Gma16g00521	428	PRINTS	Uridine kinase signature	53	70	-	-
	Gma16g00521	428	PRINTS	Uridine kinase signature	83	94	-	-
	Gma16g00521	428	PRINTS	Uridine kinase signature	128	143	-	-
	Gma16g00521	428	PRINTS	Uridine kinase signature	185	195	-	-
	Gma16g00521	428	PRINTS	Uridine kinase signature	199	210	-	-
	Gma16g00521	428	PRINTS	Uridine kinase signature	221	234	-	-
	Gma16g00521	428	PANTHER	URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC	40	427	IPR029930	GO:0004849\|GO:0044206
	Gma16g00521	428	Pfam	Uracil phosphoribosyltransferase	271	426	-	-
	Gma16g00521	428	CDD	PRTases_typeI	330	422	IPR000836	-
	Gma16g00521	428	Pfam	Phosphoribulokinase / Uridine kinase family	55	241	IPR006083	GO:0005524\|GO:0016301

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma16g00521	Gma-Chr16	5776725	5783371	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma16g00521	1	427	PRT Gene Family	AT5G40870	84.862	0.0	751

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma16g00521	K00876		-	gmx:100780005	830.091