Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00518 ATGCAACGCTACCATATTACTGGATTGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA 456 0.3904 MQRYHITGLDDYKKYSGLCHMVQKLVNILKQMDQKDPFRIDMTDKLLEKLYNMGVIPTRQSIMLCKRLTVSSFCRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKIKRKVLQYNDKLDDYDLMN 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00518 151 Pfam S4 domain 77 122 IPR002942 GO:0003723
Gma16g00518 151 ProSiteProfiles S4 RNA-binding domain profile. 77 142 - -
Gma16g00518 151 CDD S4 77 143 - -
Gma16g00518 151 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 150 IPR022801 -
Gma16g00518 151 SUPERFAMILY Alpha-L RNA-binding motif 2 143 - -
Gma16g00518 151 Gene3D - 76 151 IPR036986 GO:0003723
Gma16g00518 151 Pfam Ribosomal protein S4/S9 N-terminal domain 11 74 IPR001912 GO:0019843
Gma16g00518 151 SMART Ribosomal_S4_2 1 75 IPR001912 GO:0019843
Gma16g00518 151 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 1 150 - -
Gma16g00518 151 SMART s4_6 76 143 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00518 Gma-Chr16 5747818 5749968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00518 32 117 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 1.12e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00518 K14560 - gmx:100817428 299.671