Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00515 ATGGGAGAGGATTCTAGGGAGTTTGGAAAAAGCACAAAAATCAATCACAAAATGGAAGAAGTTCAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCCCCTGAATGAGCCACTACTGCTCAAGAGGACTCGGACACTGTCTTCCAACCCTCTTGCTCTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATgagaatgatctattcaagcatgactggaggagcagatcaagagttcaagtgttacaatacatattcttgaaatggttactagcattccttgttggacttctcactggtattatagccactctcatcaatcttgctgttgagaatattgctgggtataagctTCTGGCTGTTCTTAAATACATCCACAAAGAAAGGTACTTGACGGGTTTCCTATATTTCACGGGCATTAATTTCGTTTTGACATTTGTTGCTGCTATTCTCTGTGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAGATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCCACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGTCTAGATTTGGGAAAAGAAGGACCGTTGGTGCATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCTGACAATTACAGGACCAAATGGCACTGGCTTCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCATCTTCAGGAGTTTGTGCAGCTTTCCGGGCTCCAGTCGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTTTTCAGCACAGCTGTGGTGGTAGTGGTGCTCAGGGCCTTCATTGAAATCTGTCATACTGGGAAATGCGGCCTTTTTGGTGAAGGAGGATTGATCATGTTTGACGTAAGCAATGTCACAGTGAGGTACCATGTTATGGATATCGTCCTTGTTGTAGTCATTGGAATCATTGGTGGTGTATTGGGAAGCCTTTACAATCATGTGCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAAAAAGGAAGAACACATAAACTCCTCCTCAGTCTTGCAGTTGCACTATTCACATCAATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGTGATCCATCACTTCCAGAGTCAGCCTGCCCCACCAACGGACGGTCTGGAAATTTCAAACAATTCAACTGCCCCCCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCCGTTCGAAACATATTCTCAACCAACACTCCTCAAGAATATCAACCATTGTCCCTCGTAATTTTCTTTCTACTCTATTGCATATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTCTTCCTCCCAATCATTCTGATGGGCTCAGGTTATGGCCGCCTTCTCGGCATCTACATGGGACCTCATACAAACATTGACCAAGGGCTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATTGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCACCAGTGGTTACCCTCCATGGAGTAGAAAAAGTAGCCAAAATAGTAGATGTCTTGAAAAACACAACACATAATGCTTTCCCTGTTATGGACAATGGGGTAGTACCACCAGTAGTAGGACAGGCCAATGGGGGAACAGAACTTCATGGACTGATTCTAAGAGCACATCTCATCCAGGCAATAAAGAAGAAGTGGTTCCTTAAAGAAAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGAGGTGGCTGTGACCAGTGAGGAAATGGAAATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGACCCTCTTCAGGCAAGTTGGACTTCGACATCTGCTCGTAGTACCCAAGTATCAAGCCTCTGGGATATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTACTTGCCCAAAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGGGTAGAGAAAAGACGAATTGA 2376 0.4137 MGEDSREFGKSTKINHKMEEVQREEEIDPESNPLNEPLLLKRTRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWLLAFLVGLLTGIIATLINLAVENIAGYKLLAVLKYIHKERYLTGFLYFTGINFVLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRTKWHWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHTGKCGLFGEGGLIMFDVSNVTVRYHVMDIVLVVVIGIIGGVLGSLYNHVLHKVLRLYNLINQKGRTHKLLLSLAVALFTSMCQYGLPFLAKCTPCDPSLPESACPTNGRSGNFKQFNCPPGYYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLVIFFLLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFIDANPEPWMRNLTVGELVDVKPPVVTLHGVEKVAKIVDVLKNTTHNAFPVMDNGVVPPVVGQANGGTELHGLILRAHLIQAIKKKWFLKERRRTEEWEVREKFTWVELAEREGSIEEVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMTLFRQVGLRHLLVVPKYQASGISPVIGILTRQDLLAQNILTVFPHLAKSKGREKTN 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00515 791 Pfam Voltage gated chloride channel 150 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma16g00515 791 ProSiteProfiles CBS domain profile. 718 784 IPR000644 -
Gma16g00515 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 786 - -
Gma16g00515 791 MobiDBLite consensus disorder prediction 1 30 - -
Gma16g00515 791 Gene3D - 593 773 IPR046342 -
Gma16g00515 791 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma16g00515 791 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma16g00515 791 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma16g00515 791 PRINTS Chloride channel signature 483 503 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma16g00515 791 PRINTS Chloride channel signature 515 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma16g00515 791 PRINTS Chloride channel signature 533 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma16g00515 791 PRINTS Chloride channel signature 571 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma16g00515 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 604 770 - -
Gma16g00515 791 SMART cbs_1 606 666 IPR000644 -
Gma16g00515 791 SMART cbs_1 721 774 IPR000644 -
Gma16g00515 791 SUPERFAMILY CBS-domain pair 588 771 IPR046342 -
Gma16g00515 791 Gene3D Clc chloride channel 84 586 - -
Gma16g00515 791 PANTHER CHLORIDE CHANNEL PROTEIN 11 786 - -
Gma16g00515 791 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma16g00515 791 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma16g00515 791 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma16g00515 791 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma16g00515 791 PRINTS Plant CLC chloride channel signature 435 451 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gma16g00515 791 SUPERFAMILY Clc chloride channel 71 586 IPR014743 -
Gma16g00515 791 MobiDBLite consensus disorder prediction 1 34 - -
Gma16g00515 791 CDD ClC_6_like 62 584 - -
Gma16g00515 791 Pfam CBS domain 720 770 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00515 Gma-Chr16 5722712 5728550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00515 3 786 Ion Channels AT3G27170 78.827 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00515 K05016 - gmx:100788620 1479.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00515 16 5722712 5728550 Gma05g00736 05 10114345 10119355 PCT
Gma16g00515 16 5722712 5728550 Gma19g00861 19 34256460 34260890 PCT
Gma05g00736 05 10114345 10119355 Gma16g00515 16 5722712 5728550 PCT
Gma19g00861 19 34256460 34260890 Gma16g00515 16 5722712 5728550 PCT