Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00513 ATGTATACACAAAAACAAAATTTAATTAAAACAACAAACGCAGAACGTACTGTGTATGATTCTTGGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGACCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTTCCCATGCTTCACCCTGAGAAATTCGTTAAGCTAGGAATTGATCCTCCAAAGGGTGTTCTTTGCTATAGTCCACCAGGGACTGGCAAAACACTTTTAGCTAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGATGCTCGAATGGTTCGTGAACTATTTCAGATGGCCCACTCAAAGACGGCATGCATTGTGTTTTTCGATGAAGTTGATGCAATTGGGGGTGCACGGTTTGATGATGGTGTTGGTGGTGATAATGAGGTTCAGCACACTATGCTTGAAATTGTGAATTCTACCGGGGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATAAACTATGTGGAAGAGAACGAGCCGGAGGAGAGGCTGCTCAACCGCTTCCGGAGAGAGGTCATGAGAGCCGGAGTCATTCAGGAGTGCAAGAGGAGACGGTTCTTCGAGAACAAGCAGGAGGAGAAGAAGCGCAAGTCCCGCGAAGCTGCCAAGCGTAAAAGCAGAAGCAGGCGCTTTCAATCAAGATTTCAACCACAAAACAAGCCAGATGTTGCACCAACCAAGAAGGAAGAGGATAATGATAATTGGAATCTTCCAGAAGTAGACGCTCCATATATTTCGACTGCATGA 891 0.4388 MYTQKQNLIKTTNAERTVYDSWVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYSPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEDARMVRELFQMAHSKTACIVFFDEVDAIGGARFDDGVGGDNEVQHTMLEIVNSTGADIRSVCTEAGINYVEENEPEERLLNRFRREVMRAGVIQECKRRRFFENKQEEKKRKSREAAKRKSRSRRFQSRFQPQNKPDVAPTKKEEDNDNWNLPEVDAPYISTA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00513 296 Pfam ATPase family associated with various cellular activities (AAA) 93 220 IPR003959 GO:0005524|GO:0016887
Gma16g00513 296 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 22 185 - -
Gma16g00513 296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 219 IPR027417 -
Gma16g00513 296 SMART AAA_5 89 227 IPR003593 -
Gma16g00513 296 Hamap 30S ribosomal protein S21 [rpsU]. 198 254 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gma16g00513 296 Gene3D - 46 217 IPR027417 -
Gma16g00513 296 Gene3D Ribosomal protein S8 218 251 IPR038380 -
Gma16g00513 296 PRINTS Ribosomal protein S21 family signature 202 210 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gma16g00513 296 PRINTS Ribosomal protein S21 family signature 222 232 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gma16g00513 296 PRINTS Ribosomal protein S21 family signature 210 219 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gma16g00513 296 PRINTS Ribosomal protein S21 family signature 234 244 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gma16g00513 296 TIGRFAM S21p: ribosomal protein bS21 202 255 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gma16g00513 296 MobiDBLite consensus disorder prediction 237 296 - -
Gma16g00513 296 Pfam Ribosomal protein S21 203 253 IPR001911 GO:0003735|GO:0005840|GO:0006412
Gma16g00513 296 CDD AAA 59 220 - -
Gma16g00513 296 Gene3D - 21 45 IPR012340 -
Gma16g00513 296 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 22 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00513 Gma-Chr16 5691165 5703381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00513 58 220 Calmodulin-binding Proteins AT3G56690 31.902 8.01e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00513 K03061 - atr:18427470 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00513 16 5691165 5703381 Gma05g00737 05 10140636 10144497 PCT
Gma16g00513 16 5691165 5703381 Gma19g00864 19 34351083 34352749 PCT
Gma05g00737 05 10140636 10144497 Gma16g00513 16 5691165 5703381 PCT
Gma19g00864 19 34351083 34352749 Gma16g00513 16 5691165 5703381 PCT