Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00487 ATGGATCCCAAGGGCTCAAAGCAGCAGCCACAGCAATCACAGGAGGTGGTACCAAACTTCCTCAGCCTCCCCCAACAGCAACAAGGGAATACCAACAACAACAACATGGGAGAGAACAAACCTGCAGAGGTGAAGGATTTCCAGATAGTGGTAGCTGAGAACAAGGAAGAGAGCAAGAAACAGCAGCAACAGTTGGCACCAAAGAGGAGTTCCAACAAGGACAGGCACACCAAGGTTGAAGGCAGGGGAAGGAGGATAAGGATGCCTGCTCTCTGCGCAGCCAGAATCTTCCAGTTGACCAGGGAATTGGGTCACAAATCTGATGGGGAAACCATCCAGTGGCTCCTCCAGCAGGCTGAGCCATCCATCATAGCTGCCACTGGGACTGGCACAATACCAGCATCTGCTCTTGCTGCTGCTGGAAACTCACTCTCACCACAAGCTGCTTCTCTTTCATCATCCTTGCACCAACATCAACAAAAGATTGATGAATTGGGTGGGTCAGGGGGGAGTAGTAGTAGGGCCAGCTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATTTGGGTGTGGGTGTGGCCACAGCAGCAGGCCTATGGCCCCCTCATGTCAGTGGATTTGGATTTCAaacaccaccaacaacaacaacaccaacaacaacaacaTCATCATCTGGTCCATCTAATGCCACCTTAGCCACTGAGAGCTCCAATTACCTTCAGAAAATTGCATTCCCTGGCTTTGACTTGCCTACTTCTGCCACTAACATGATGGGTCACATGAGTTTCACCTCAATTTTGGGTGGAGGTGGGGGTGGTGGGGCCCAGCATATGCCTGGCTTGGAGCTTGGTCTTTCCCAGGATGGCCATATTGGGGTGTTGAATCAACAGGCCTTGAACcagatttatcagcagatgaatcaggctggtagagtgcatcatcatcagcatcagcatcatcatcagcatcatcagcagcaacaacaccatcagcaaactcctgctAAGGATGATTCTCAAGGCTCAGGAGGACAGTAG 1038 0.448 MDPKGSKQQPQQSQEVVPNFLSLPQQQQGNTNNNNMGENKPAEVKDFQIVVAENKEESKKQQQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSLSPQAASLSSSLHQHQQKIDELGGSGGSSSRASWQMVGGNLGRPHLGVGVATAAGLWPPHVSGFGFQTPPTTTTPTTTTSSSGPSNATLATESSNYLQKIAFPGFDLPTSATNMMGHMSFTSILGGGGGGGAQHMPGLELGLSQDGHIGVLNQQALNQIYQQMNQAGRVHHHQHQHHHQHHQQQQHHQQTPAKDDSQGSGGQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00487 345 MobiDBLite consensus disorder prediction 1 84 - -
Gma16g00487 345 Pfam TCP family transcription factor 71 160 IPR017887 -
Gma16g00487 345 MobiDBLite consensus disorder prediction 49 84 - -
Gma16g00487 345 ProSiteProfiles TCP domain profile. 72 126 IPR017887 -
Gma16g00487 345 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 343 IPR005333 GO:0003700
Gma16g00487 345 MobiDBLite consensus disorder prediction 328 345 - -
Gma16g00487 345 MobiDBLite consensus disorder prediction 312 327 - -
Gma16g00487 345 MobiDBLite consensus disorder prediction 1 39 - -
Gma16g00487 345 MobiDBLite consensus disorder prediction 211 230 - -
Gma16g00487 345 MobiDBLite consensus disorder prediction 308 345 - -
Gma16g00487 345 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 28 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00487 Gma-Chr16 5330662 5332597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00487 1 343 TCP Transcription Factor Family AT3G27010 50.975 1.53e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma16g00487 TCP 3.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00487 - - gmx:100778951 566.229