Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00480 ATGATGAATTCATTGTGTGGAAGCTCAGTGTCCCTCAAGAGTGAGAACAACAACTCTAGAACCAAAGTCCAACAACCCACCACTCCTTCAAATGACTCAGTTATGCAATCCAAGAAAAACAATGCCACTCAATCCTCTGGTGATCTAGACCAAACCAGCCTAACCCCACCAAGCTTAAACCTTCCATCACTCAAATTTGACCTTGATGGAGATGTGGAAGTTCAGTCACCAGATAGTTCAATGTGGGAATCTTTTTTTGCTGACCACAATTTAGATGGTGATTTCATGATCTCTTCCCCAGTGAGGACCCCACAAGCCTCTTCCTACAATTGCAACTACAACTATGCTCAGGGAATGCAAGGCCAGAGTCTTTCAGGGTGTTCCCCACCTCGTTTCTCATCATCACAAATTGGAGCCTTCAACAGCAACAAAGGCAAAGGACTTAGCCCCCTCCACAGGGTTTTCAACTCACCCAACAATCAATACATGCAGCATGTTGAGAACCTCTCACTGCCAGCAATAGAGTTCTTGGAGGACTACCAATTAGGGTACTCTTCATCAACAACCAACAAGATGTGTTGCTCTGATCACAACAACATTGCAAGTTCATCTGAGTGCTTTGACTTGTCAATGTCTCATCAAATCCCTTCGTCCATGTTGGATGGCTTGGCACTGCACAATTCCTCCTCGAGGTACCATCGTGGATCGGTTGTCGTCGACGAAGAATCGTCGGTGCACGGTGGTGGTGCTGGTGGCTTTTCTCAGCTATCAGAAGAGAGTGACATCTATCACCAGATGGGGTCCATGGCTAGTGCTTCTCTTTCACAGGCTCTACAACAAGAACACTACCAAGAGAAGCAGCAAGCACAACAACTGCAACAACAACAACAACAGCAGCAGCAGCACCAGCAAGAGAATCTGATGGTGCCTATTCCAATAGGAGTCGAGCAGGAGCAAGACAGCGGGCTTCAACTGGTGCACCTGCTCCTGGCATGCGCGGAGGCAGTAGCCAAAGAAGAATACATGCTGGCAAGAAGGTACCTCCACCACCTCAACCGCGTCGTCACCCCCTTAGGCGACTCCATGCAGCGCGTCGCCGCCTGCTTCACCGACTCCCTAAGCGTCAGGCTCAACTCCACCCTCACTCCCAAACCTACAACACCTTCCAAACCCTTAACCCCTTCAAACTCCCTCGAGGTCCTCAAGATCTACCAGATCGTCTACCAGGCCTGTCCCTACGTCAAGTTCGCCCACTTCACCGCCAACCAGGCCATCTTCGAGGCTTTCGAGACCGAAGAACGCGTCCACGTCATCGATCTCGACATCCTCCAGGGCTACCAGTGGCCTGCCTTCATGCAGGCCCTGGCAGCCCGCCCAGCAGGCGCACCTTTTTTAAGGATCACGGGAGTGGGCCCCTCGATAGACACTGTCCGAGAAACCGGACGGTGTCTTACCGAGCTGGCCCACTCCCTACGGATCCCCTTCGAGTTCCACGCGGTCGGGGAACAACTTGAGGATCTCAAGCCACACATGTTAAACCGCCGTGTCGGGGAGGCGCTGGCGGTTAATGCGGTTAACCGCCTCCACCGCGTCCCCGGCAACCACTTGGGCAATTTGCTGACCATGCTACGTGACCAGGCACCTAGCATAGTAACTCTGGTGGAGCAAGAAGCGAGCCATAACGGACCTTACTTTCTAGGGCGTTTTCTTGAGGCATTGCATTACTACTCCGCCATTTTCGACTCGTTGGACGCCACTTTTCCGGCGGAGTCGGCGCAGCGGGCGAAGGTGGAGCAGTACATATTCGCGCCGGAGATACGAAACATCGTGGCGTGCGAGGGGCCGGAGAGGTTCGAGAGGCACGAGAGGTTAGAGAAGTGGCGGAAGATGATGGAGGGGAAGGGGTTCAAGGGAGTGGTGCTGAGTCCGAACGCGGTGACTCAGTCGAAGATATTGTTGGGGTTGTATTCATGTGAGGGGTATAGGTTGACGGAGGATAAGGGTTGCTTGTTGCTTGGGTGGCAGGATAGGGCCATCGTTGCTGCGTCTGCATGGCGTTGTTGA 2064 0.5276 MMNSLCGSSVSLKSENNNSRTKVQQPTTPSNDSVMQSKKNNATQSSGDLDQTSLTPPSLNLPSLKFDLDGDVEVQSPDSSMWESFFADHNLDGDFMISSPVRTPQASSYNCNYNYAQGMQGQSLSGCSPPRFSSSQIGAFNSNKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEFLEDYQLGYSSSTTNKMCCSDHNNIASSSECFDLSMSHQIPSSMLDGLALHNSSSRYHRGSVVVDEESSVHGGGAGGFSQLSEESDIYHQMGSMASASLSQALQQEHYQEKQQAQQLQQQQQQQQQHQQENLMVPIPIGVEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSVRLNSTLTPKPTTPSKPLTPSNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPAGAPFLRITGVGPSIDTVRETGRCLTELAHSLRIPFEFHAVGEQLEDLKPHMLNRRVGEALAVNAVNRLHRVPGNHLGNLLTMLRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAPEIRNIVACEGPERFERHERLEKWRKMMEGKGFKGVVLSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWRC 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00480 687 Pfam GRAS domain family 325 686 IPR005202 -
Gma16g00480 687 MobiDBLite consensus disorder prediction 1 62 - -
Gma16g00480 687 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 685 IPR005202 -
Gma16g00480 687 Coils Coil 275 306 - -
Gma16g00480 687 MobiDBLite consensus disorder prediction 1 60 - -
Gma16g00480 687 PANTHER GRAS FAMILY PROTEIN RAM1 16 685 - -
Gma16g00480 687 ProSiteProfiles GRAS family profile. 316 686 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00480 Gma-Chr16 5199376 5202639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00480 313 687 GRAS Transcription Factor Family AT1G66350 43.832 4.32e-99 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma16g00480 GRAS 3.7e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00480 - - gmx:100775374 1291.56