Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00472 ATGGGTAGCTGCCCTTGTTTCGGGTTGAGGAGCTGGAAGACCAGAGTGAAGAGCGGCGTCAAGGCTCATCAGGACGAACAGAACAAGAATCGCAAATCTCTGGACAACAACAGCAATAATAATATTAATAATGTCTCTGAAACTTCTTCAGgacttggaccagaagaaaacctaacagagagtggcagttCTTATAAGCCTCAGATATTTACCTTCCGGGAGCTTGCAACAGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGGCAAGGTGGATTTGGCATTGTTTATAAAGGCACGATCGGGAAAATAAATCAGGTTGTAGCTGTTAAAAGACTTGATACTACTGGTGTCCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATTCCAACCTTGTTAATATGATTGGTTACTGTGCTGAAGGGGATCAACGTCTTCTTGTGTATGAGTACATGGCTTTGGGATCTTTAGAATCTCATCTTCATGatgtttcaCCTGATGAAGAACCACTTGATTGGAATACCAGAATGATGATAGCATGTGGGGCAGCAAAAGGACTAAATTATCTGCACCATGAAGCAAAGCCTTCTGTTATATACAGGGATCTGAAATCATCCAACATACTATTGGATGAAGGTTTCCATCCAAAACTTTCTGATTTTGGGCTTGCAAaatttggtccaaccggagaacaatcatatgttgccactagggtcatgggaacacaaggttactgtgcccctgaatatgccactagtggaaaattaacgattagatctgacatttacagttttggggttgtgttattggaactaattactggacgcagagcatatgatgataacagtggccctgtaaagcatcttgtagaatgggcacgcccaatgtttagagacaaaaggagttttccaagattggtagatccacggcttaaagTCAACTCAGCAGGGATGGAGAGTGTAGAATCTCCAAAAGAAACATCTGTGATTTTGCCTCAAGAATCAGAAAGAGAGCGAGCTGTTGCAGAGGCCAAGCTGTGGGGGGAGACATGGAGGCAGAGACGACAAAGTGAGCAAAGTAGTCCTGAaggaagcaaatag 1122 0.3048 MGSCPCFGLRSWKTRVKSGVKAHQDEQNKNRKSLDNNSNNNINNVSETSSGLGPEENLTESGSSYKPQIFTFRELATATKNFRDETFIGQGGFGIVYKGTIGKINQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHSNLVNMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEPLDWNTRMMIACGAAKGLNYLHHEAKPSVIYRDLKSSNILLDEGFHPKLSDFGLAKFGPTGEQSYVATRVMGTQGYCAPEYATSGKLTIRSDIYSFGVVLLELITGRRAYDDNSGPVKHLVEWARPMFRDKRSFPRLVDPRLKVNSAGMESVESPKETSVILPQESERERAVAEAKLWGETWRQRRQSEQSSPEGSK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00472 373 Gene3D Transferase(Phosphotransferase) domain 1 159 362 - -
Gma16g00472 373 MobiDBLite consensus disorder prediction 33 62 - -
Gma16g00472 373 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Gma16g00472 373 MobiDBLite consensus disorder prediction 324 343 - -
Gma16g00472 373 CDD STKc_IRAK 88 328 - -
Gma16g00472 373 Gene3D Phosphorylase Kinase; domain 1 54 158 - -
Gma16g00472 373 PANTHER OS07G0668900 PROTEIN 13 319 - -
Gma16g00472 373 MobiDBLite consensus disorder prediction 18 62 - -
Gma16g00472 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gma16g00472 373 Pfam Protein kinase domain 83 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00472 373 MobiDBLite consensus disorder prediction 18 32 - -
Gma16g00472 373 SMART serkin_6 82 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00472 373 PANTHER OS07G0668900 PROTEIN 13 319 - -
Gma16g00472 373 ProSiteProfiles Protein kinase domain profile. 82 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00472 373 SUPERFAMILY Protein kinase-like (PK-like) 60 311 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00472 Gma-Chr16 5099267 5105682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00472 1 368 Glycoside Hydrolase AT3G07070 47.642 1.13e-120 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gma16g00472 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00472 K13430 - gmx:100805675 695.656