Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00454 ATGATGATGGATCCGCGACAGCGAGAGAAGCTACTTCACAAAACCGAGGCCTGTGCTTTCGTGGCAGGTGTTGTTCCGGAGCTTTCCCTTGTCACCGTTCCAGGGAACaacaacaacaccaacaacgttaacaacaacaacaacaacgttTCTCATTCTCAATCTCACCGGTCGGGTCGGATCCATGAAAACCACCACCACCACCTTGGTCTCGTGGCTGCTGTCACCACCACCTTCGGAACTGTTCACAGGAAGAAAAGGATGGCCAGACAAAGAAGATCCACTAACCCCACTTTGTTGATGAACCCTCTCATCAACAACAACAACAACAAGTCTGGTTCTTCTCTTCCTTCTCCAAGTATTGCTTCCTCCTCGCACGTGCCACTCTCCTCCTCAACTCTCCCGCCCGCACGTGAAATCGATCAAAGAAGGTTGAGATTCCTTTTCCAGAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATATTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCAGCTCTTGAATCCAAAGAAGGAATTGTAATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTGTCAACACACATGGCCTTCGCTTTGGAGATTCCATTTTGGTTTACCAAGATAGTGAAAACAACAATTATGTTATTCAGGCGAAAAAGGCTTCTGATCAGGATGAATTTATGGAAGAAACTAGTGATACCATCAATGATATCTTCCTTAATGATTATGAAGTGAACAAACCTGGTTGCTTCAATGTAACCTATCCTGCAGTGAATGATACAGGCATGTCATTCATATATGAGACTACCTTCTCAAATGACTCCCCTCTTGATTTTTTGGGTGGATCAATGACCAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTAA 1014 0.4181 MMMDPRQREKLLHKTEACAFVAGVVPELSLVTVPGNNNNTNNVNNNNNNVSHSQSHRSGRIHENHHHHLGLVAAVTTTFGTVHRKKRMARQRRSTNPTLLMNPLINNNNNKSGSSLPSPSIASSSHVPLSSSTLPPAREIDQRRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGIVISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLRFGDSILVYQDSENNNYVIQAKKASDQDEFMEETSDTINDIFLNDYEVNKPGCFNVTYPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00454 337 MobiDBLite consensus disorder prediction 37 55 - -
Gma16g00454 337 Gene3D - 145 263 IPR015300 -
Gma16g00454 337 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 37 337 IPR044800 GO:0003700
Gma16g00454 337 MobiDBLite consensus disorder prediction 85 135 - -
Gma16g00454 337 Pfam B3 DNA binding domain 149 247 IPR003340 GO:0003677
Gma16g00454 337 CDD B3_DNA 147 249 IPR003340 GO:0003677
Gma16g00454 337 MobiDBLite consensus disorder prediction 37 56 - -
Gma16g00454 337 SUPERFAMILY DNA-binding pseudobarrel domain 147 246 IPR015300 -
Gma16g00454 337 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 37 337 - -
Gma16g00454 337 SMART B3_2 149 251 IPR003340 GO:0003677
Gma16g00454 337 MobiDBLite consensus disorder prediction 93 135 - -
Gma16g00454 337 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00454 Gma-Chr16 4885967 4889173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00454 66 337 B3 DNA Binding Superfamily AT3G26790 51.307 1.23e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma16g00454 B3 1.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00454 - - gmx:100783961 582.793