Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00447 ATGAATATGGAGCGCTACACGCTACCCGCACCACCCATTAATATTATTCTCGAGGAAGAAGAAGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACACCAACAACAACAACCTGACTCTTACTTCAACTTCAACTTTAACTCTTCAATTAGTTCTGCTACCATACCCTTTGTTCCTAACATGGAATCTTTTCCTTCTCTTGACCCTTTCTCCCCTTCACTTTCATCACTTCCTTTCTTCAACAACAACAGCAGCAACAACATGGCATTTGACCCGGGTTTTGACTTGGGCCTGGACACTACTGGGCTTCACTCTTCTGTTCCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGGGCTTTGAGTTCTCGGAACTCGAGGCCCTCACTGGACCTGGGAATGGAAATAATGCCCCTTTTGCGGACGGGGCAAAGGTGGCTGCGGCCATGCTGCTGCGGCCACCTCCTCTCGATGGGGCGCAGCAGCAGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAAATTCCGGGGCTGGAGACGGTGaggaggaaggggaggaagtgggaggaaggaggaagaggaggggagggggaggaagggAGCAGTGCTGACGTGGATGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAATAATGGGAACAATGGTTTGAAGCTGAGTGAGAATAATGGTGGAGATAACAAGGGGAAGAGGAAGGGGTTACCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTAGAGTCAACTCCACCTGGCTCGTTGCTGACACCTTCTTCTACAAGCTTTCAGCCACTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCTTGGATTCCGCGGGCTTCCATGGTATGATGTGA 1353 0.4841 MNMERYTLPAPPINIILEEEEEEENIAIAMGAPLIPSFKSMLQHQQQQPDSYFNFNFNSSISSATIPFVPNMESFPSLDPFSPSLSSLPFFNNNSSNNMAFDPGFDLGLDTTGLHSSVPPAPHLFSQAQMGFEFSELEALTGPGNGNNAPFADGAKVAAAMLLRPPPLDGAQQQQQQPTLYRKRRGTAAEIPGLETVRRKGRKWEEGGRGGEGEEGSSADVDGSGLNYESDEQNENNGNNGLKLSENNGGDNKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLTPSSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHGMM 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00447 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Gma16g00447 450 MobiDBLite consensus disorder prediction 168 268 - -
Gma16g00447 450 SMART finulus 264 313 IPR011598 GO:0046983
Gma16g00447 450 MobiDBLite consensus disorder prediction 223 247 - -
Gma16g00447 450 CDD bHLH_AtAMS_like 261 325 - -
Gma16g00447 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 327 IPR036638 GO:0046983
Gma16g00447 450 MobiDBLite consensus disorder prediction 195 216 - -
Gma16g00447 450 PANTHER BHLH TRANSCRIPTIONAL FACTOR 68 450 - -
Gma16g00447 450 CDD ACT_UUR-ACR-like 379 420 - -
Gma16g00447 450 Pfam Helix-loop-helix DNA-binding domain 265 307 IPR011598 GO:0046983
Gma16g00447 450 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 68 450 - -
Gma16g00447 450 Coils Coil 301 321 - -
Gma16g00447 450 MobiDBLite consensus disorder prediction 249 268 - -
Gma16g00447 450 Gene3D - 252 321 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00447 Gma-Chr16 4789526 4793124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00447 136 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 63.823 1.24e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma16g00447 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00447 - - gmx:100804797 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00447 16 4789526 4793124 Gma16g01347 16 32398480 32402630 PCT
Gma16g01347 16 32398480 32402630 Gma16g00447 16 4789526 4793124 PCT